RNA–Protein interactions for RNA: ENST00000370542.1

LMO4-201, Transcript of LIM domain only 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMO4, Length 1,260 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4-201ENST00000370542 FBXL6Q8N531 539 aa16.5■□□□□ 0.23
LMO4-201ENST00000370542 CCDC150Q8NCX0 1101 aa16.5■□□□□ 0.23
LMO4-201ENST00000370542 LEO1Q8WVC0 666 aaPredicted RBP16.5■□□□□ 0.23
LMO4-201ENST00000370542 MRPS27Q92552 414 aaKnown RBP16.5■□□□□ 0.23
LMO4-201ENST00000370542 HAS1Q92839 578 aa16.5■□□□□ 0.23
LMO4-201ENST00000370542 ATOH1Q92858 354 aaPredicted RBP16.5■□□□□ 0.23
LMO4-201ENST00000370542 IGFLR1Q9H665 355 aa16.5■□□□□ 0.23
LMO4-201ENST00000370542 ANO10Q9NW15 660 aa16.5■□□□□ 0.23
LMO4-201ENST00000370542 SEPT9Q9UHD8 586 aaPredicted RBP16.5■□□□□ 0.23
LMO4-201ENST00000370542 KMT2BQ9UMN6 2715 aaPredicted RBP16.5■□□□□ 0.23
LMO4-201ENST00000370542 TMEM150BA6NC51 233 aa16.49■□□□□ 0.23
LMO4-201ENST00000370542 FDPSP14324 419 aaKnown RBP16.49■□□□□ 0.23
LMO4-201ENST00000370542 XBP1P17861 261 aa16.49■□□□□ 0.23
LMO4-201ENST00000370542 LIG1P18858 919 aa16.49■□□□□ 0.23
LMO4-201ENST00000370542 QARSP47897 775 aaKnown RBP16.49■□□□□ 0.23
LMO4-201ENST00000370542 ID4P47928 161 aa16.49■□□□□ 0.23
LMO4-201ENST00000370542 NRIP1P48552 1158 aa16.49■□□□□ 0.23
LMO4-201ENST00000370542 TPM4P67936 248 aa16.49■□□□□ 0.23
LMO4-201ENST00000370542 SPIRE1Q08AE8 756 aa16.49■□□□□ 0.23
LMO4-201ENST00000370542 DUSP6Q16828 381 aa16.49■□□□□ 0.23
LMO4-201ENST00000370542 LETM2Q2VYF4 491 aa16.49■□□□□ 0.23
LMO4-201ENST00000370542 MTERF2Q49AM1 385 aa16.49■□□□□ 0.23
LMO4-201ENST00000370542 KCNT2Q6UVM3 1135 aa16.49■□□□□ 0.23
LMO4-201ENST00000370542 FILIP1Q7Z7B0 1213 aa16.49■□□□□ 0.23
LMO4-201ENST00000370542 LRRC43Q8N309 656 aa16.49■□□□□ 0.23
LMO4-201ENST00000370542 OXER1Q8TDS5 423 aa16.49■□□□□ 0.23
LMO4-201ENST00000370542 CACTINQ8WUQ7 758 aaKnown RBP16.49■□□□□ 0.23
LMO4-201ENST00000370542 TNFRSF25Q93038 417 aa16.49■□□□□ 0.23
LMO4-201ENST00000370542 POP1Q99575 1024 aaKnown RBP16.49■□□□□ 0.23
LMO4-201ENST00000370542 NAP1L4Q99733 375 aaKnown RBP16.49■□□□□ 0.23
LMO4-201ENST00000370542 GCOM2Q9BZD3 368 aaPredicted RBP16.49■□□□□ 0.23
LMO4-201ENST00000370542 PCDHGC5Q9Y5F6 944 aa16.49■□□□□ 0.23
LMO4-201ENST00000370542 CCDC194A0A1B0GVG4 234 aa16.48■□□□□ 0.23
LMO4-201ENST00000370542 BECN2A8MW95 431 aa16.48■□□□□ 0.23
LMO4-201ENST00000370542 DKC1O60832 514 aaKnown RBP eCLIP16.48■□□□□ 0.23
LMO4-201ENST00000370542 ZNF623O75123 536 aa16.48■□□□□ 0.23
LMO4-201ENST00000370542 P4HBP07237 508 aaKnown RBP16.48■□□□□ 0.23
LMO4-201ENST00000370542 NDUFV1P49821 464 aa16.48■□□□□ 0.23
LMO4-201ENST00000370542 DNM2P50570 870 aa16.48■□□□□ 0.23
LMO4-201ENST00000370542 CBX2Q14781 532 aaPredicted RBP16.48■□□□□ 0.23
LMO4-201ENST00000370542 ME3Q16798 604 aa16.48■□□□□ 0.23
LMO4-201ENST00000370542 EARS2Q5JPH6 523 aaKnown RBP16.48■□□□□ 0.23
LMO4-201ENST00000370542 SPOUT1Q5T280 376 aaKnown RBP16.48■□□□□ 0.23
LMO4-201ENST00000370542 C4orf19Q8IY42 314 aa16.48■□□□□ 0.23
LMO4-201ENST00000370542 THNSL1Q8IYQ7 743 aa16.48■□□□□ 0.23
LMO4-201ENST00000370542 VN1R2Q8NFZ6 395 aa16.48■□□□□ 0.23
LMO4-201ENST00000370542 NLRP7Q8WX94 980 aa16.48■□□□□ 0.23
LMO4-201ENST00000370542 ZNF668Q96K58 619 aaPredicted RBP16.48■□□□□ 0.23
LMO4-201ENST00000370542 JPH2Q9BR39 696 aaPredicted RBP16.48■□□□□ 0.23
LMO4-201ENST00000370542 LLPHQ9BRT6 129 aaKnown RBP16.48■□□□□ 0.23
LMO4-201ENST00000370542 INO80BQ9C086 356 aaPredicted RBP16.48■□□□□ 0.23
LMO4-201ENST00000370542 DHX33Q9H6R0 707 aaKnown RBP16.48■□□□□ 0.23
LMO4-201ENST00000370542 TLE6Q9H808 572 aa16.48■□□□□ 0.23
LMO4-201ENST00000370542 IFT122Q9HBG6 1241 aa16.48■□□□□ 0.23
LMO4-201ENST00000370542 NGRNQ9NPE2 291 aaKnown RBP16.48■□□□□ 0.23
LMO4-201ENST00000370542 CYP26B1Q9NR63 512 aa16.48■□□□□ 0.23
LMO4-201ENST00000370542 GJB4Q9NTQ9 266 aa16.48■□□□□ 0.23
LMO4-201ENST00000370542 WRAP73Q9P2S5 460 aaPredicted RBP16.48■□□□□ 0.23
LMO4-201ENST00000370542 EPG5Q9HCE0 2579 aa16.47■□□□□ 0.23
LMO4-201ENST00000370542 A0A087WZ62 844 aa16.47■□□□□ 0.23
LMO4-201ENST00000370542 LOC730098B7Z3J9 87 aa16.47■□□□□ 0.23
LMO4-201ENST00000370542 FGFR4P22455 802 aa16.47■□□□□ 0.23
LMO4-201ENST00000370542 PPM1AP35813 382 aa16.47■□□□□ 0.23
LMO4-201ENST00000370542 PHKA2P46019 1235 aa16.47■□□□□ 0.23
LMO4-201ENST00000370542 EPHA7Q15375 998 aa16.47■□□□□ 0.23
LMO4-201ENST00000370542 CLUL1Q15846 466 aa16.47■□□□□ 0.23
LMO4-201ENST00000370542 EXOC8Q8IYI6 725 aa16.47■□□□□ 0.23
LMO4-201ENST00000370542 SLC39A11Q8N1S5 342 aa16.47■□□□□ 0.23
LMO4-201ENST00000370542 SUSD6Q92537 303 aa16.47■□□□□ 0.23
LMO4-201ENST00000370542 ZNF396Q96N95 335 aaPredicted RBP16.47■□□□□ 0.23
LMO4-201ENST00000370542 ZNF558Q96NG5 402 aa16.47■□□□□ 0.23
LMO4-201ENST00000370542 SH2D3AQ9BRG2 576 aa16.47■□□□□ 0.23
LMO4-201ENST00000370542 FDXACB1Q9BRP7 624 aaPredicted RBP16.47■□□□□ 0.23
LMO4-201ENST00000370542 L2HGDHQ9H9P8 463 aa16.47■□□□□ 0.23
LMO4-201ENST00000370542 SUCLA2Q9P2R7 463 aaPredicted RBP16.47■□□□□ 0.23
LMO4-201ENST00000370542 ORC3Q9UBD5 711 aaPredicted RBP16.47■□□□□ 0.23
LMO4-201ENST00000370542 CACNA1BQ00975 2339 aa16.47■□□□□ 0.23
LMO4-201ENST00000370542 PRR23AA6NEV1 266 aa16.46■□□□□ 0.23
LMO4-201ENST00000370542 CSDE1O75534 798 aaKnown RBP16.46■□□□□ 0.23
LMO4-201ENST00000370542 SKILP12757 684 aa16.46■□□□□ 0.23
LMO4-201ENST00000370542 IBSPP21815 317 aaPredicted RBP16.46■□□□□ 0.23
LMO4-201ENST00000370542 SFPQP23246 707 aaKnown RBP eCLIP16.46■□□□□ 0.23
LMO4-201ENST00000370542 IQCB1Q15051 598 aa16.46■□□□□ 0.23
LMO4-201ENST00000370542 CCDC73Q6ZRK6 1079 aa16.46■□□□□ 0.23
LMO4-201ENST00000370542 PIK3AP1Q6ZUJ8 805 aa16.46■□□□□ 0.23
LMO4-201ENST00000370542 RBM23Q86U06 439 aaKnown RBP16.46■□□□□ 0.23
LMO4-201ENST00000370542 CEP57L1Q8IYX8 460 aa16.46■□□□□ 0.23
LMO4-201ENST00000370542 CCAR2Q8N163 923 aaKnown RBP16.46■□□□□ 0.23
LMO4-201ENST00000370542 ZNF579Q8NAF0 562 aaKnown RBP16.46■□□□□ 0.23
LMO4-201ENST00000370542 WASF1Q92558 559 aa16.46■□□□□ 0.23
LMO4-201ENST00000370542 BPIFA3Q9BQP9 254 aa16.46■□□□□ 0.23
LMO4-201ENST00000370542 MRPL9Q9BYD2 267 aaKnown RBP16.46■□□□□ 0.23
LMO4-201ENST00000370542 SPG21Q9NZD8 308 aa16.46■□□□□ 0.23
LMO4-201ENST00000370542 PUF60Q9UHX1 559 aaKnown RBP16.46■□□□□ 0.23
LMO4-201ENST00000370542 BARX2Q9UMQ3 279 aaPredicted RBP16.46■□□□□ 0.23
LMO4-201ENST00000370542 V9GYY5 206 aaPredicted RBP16.46■□□□□ 0.23
LMO4-201ENST00000370542 PER2O15055 1255 aa16.45■□□□□ 0.22
LMO4-201ENST00000370542 CCNT1O60563 726 aaKnown RBP16.45■□□□□ 0.22
LMO4-201ENST00000370542 CSPG5O95196 566 aa16.45■□□□□ 0.22
LMO4-201ENST00000370542 LARGE1O95461 756 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms