RNA–Protein interactions for RNA: ENST00000368020.5

USF1-202, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,717 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-202ENST00000368020 GABBR1Q9UBS5 961 aa15.18■□□□□ 0.02
USF1-202ENST00000368020 DIS3Q9Y2L1 958 aaKnown RBP15.18■□□□□ 0.02
USF1-202ENST00000368020 LCTP09848 1927 aa15.18■□□□□ 0.02
USF1-202ENST00000368020 TNFAIP3P21580 790 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 GARTP22102 1010 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 SNRNP35Q16560 246 aaKnown RBP15.17■□□□□ 0.02
USF1-202ENST00000368020 CCNI2Q6ZMN8 369 aaPredicted RBP15.17■□□□□ 0.02
USF1-202ENST00000368020 SLFN11Q7Z7L1 901 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 GPIHBP1Q8IV16 184 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 LRRC57Q8N9N7 239 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 TPCN2Q8NHX9 752 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 U2AF1L4Q8WU68 220 aaKnown RBP15.17■□□□□ 0.02
USF1-202ENST00000368020 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.17■□□□□ 0.02
USF1-202ENST00000368020 MPHOSPH6Q99547 160 aaKnown RBP15.17■□□□□ 0.02
USF1-202ENST00000368020 CBWD1Q9BRT8 395 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 SYT11Q9BT88 431 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 SUCLA2Q9P2R7 463 aaPredicted RBP15.17■□□□□ 0.02
USF1-202ENST00000368020 DENND3A2RUS2 1198 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 KIF4AO95239 1232 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 FTCDO95954 541 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 CNGA1P29973 690 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 COPB2P35606 906 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 ACTR2P61160 394 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 PLA2G4FQ68DD2 849 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 EMBQ6PCB8 327 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 GJB7Q6PEY0 223 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 ABHD15Q6UXT9 468 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 IFNL1Q8IU54 200 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 RIOX2Q8IUF8 465 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 RHOT2Q8IXI1 618 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 RDH13Q8NBN7 331 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 FAM71BQ8TC56 605 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 ACTRT1Q8TDG2 376 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 FBXL18Q96ME1 805 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 IKZF4Q9H2S9 585 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 PCIF1Q9H4Z3 704 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 RBPJLQ9UBG7 517 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 AJAP1Q9UKB5 411 aaPredicted RBP15.17■□□□□ 0.02
USF1-202ENST00000368020 PPME1Q9Y570 386 aa15.17■□□□□ 0.02
USF1-202ENST00000368020 DOCK5Q9H7D0 1870 aa15.16■□□□□ 0.02
USF1-202ENST00000368020 ANKRD62A6NC57 917 aa15.16■□□□□ 0.02
USF1-202ENST00000368020 NCK2O43639 380 aa15.16■□□□□ 0.02
USF1-202ENST00000368020 SUPT20HL2P0C7V6 817 aa15.16■□□□□ 0.02
USF1-202ENST00000368020 CXCR5P32302 372 aa15.16■□□□□ 0.02
USF1-202ENST00000368020 AARSP49588 968 aaKnown RBP eCLIP15.16■□□□□ 0.02
USF1-202ENST00000368020 EPHB4P54760 987 aa15.16■□□□□ 0.02
USF1-202ENST00000368020 MFAP3P55082 362 aa15.16■□□□□ 0.02
USF1-202ENST00000368020 HADHBP55084 474 aaKnown RBP15.16■□□□□ 0.02
USF1-202ENST00000368020 PRKCEQ02156 737 aa15.16■□□□□ 0.02
USF1-202ENST00000368020 KRT39Q6A163 491 aa15.16■□□□□ 0.02
USF1-202ENST00000368020 PHLDB3Q6NSJ2 640 aa15.16■□□□□ 0.02
USF1-202ENST00000368020 PEX26Q7Z412 305 aa15.16■□□□□ 0.02
USF1-202ENST00000368020 IFT20Q8IY31 132 aa15.16■□□□□ 0.02
USF1-202ENST00000368020 EIF1ADQ8N9N8 165 aaKnown RBP15.16■□□□□ 0.02
USF1-202ENST00000368020 GPR88Q9GZN0 384 aa15.16■□□□□ 0.02
USF1-202ENST00000368020 SPATC1LQ9H0A9 340 aa15.16■□□□□ 0.02
USF1-202ENST00000368020 TMEM8AQ9HCN3 771 aa15.16■□□□□ 0.02
USF1-202ENST00000368020 PDLIM7Q9NR12 457 aa15.16■□□□□ 0.02
USF1-202ENST00000368020 CYP26B1Q9NR63 512 aa15.16■□□□□ 0.02
USF1-202ENST00000368020 BTBD7Q9P203 1132 aa15.16■□□□□ 0.02
USF1-202ENST00000368020 COQ4Q9Y3A0 265 aa15.16■□□□□ 0.02
USF1-202ENST00000368020 IGF2BP3O00425 579 aaKnown RBP eCLIP15.15■□□□□ 0.02
USF1-202ENST00000368020 ZC3H11AO75152 810 aaKnown RBP eCLIP15.15■□□□□ 0.02
USF1-202ENST00000368020 RGS20O76081 388 aa15.15■□□□□ 0.02
USF1-202ENST00000368020 SLC25A27O95847 323 aa15.15■□□□□ 0.02
USF1-202ENST00000368020 CYP2C8P10632 490 aa15.15■□□□□ 0.02
USF1-202ENST00000368020 TNNT3P45378 269 aaPredicted RBP15.15■□□□□ 0.02
USF1-202ENST00000368020 GALCP54803 685 aa15.15■□□□□ 0.02
USF1-202ENST00000368020 NNTQ13423 1086 aa15.15■□□□□ 0.02
USF1-202ENST00000368020 TCEAL1Q15170 157 aa15.15■□□□□ 0.02
USF1-202ENST00000368020 CYP4F22Q6NT55 531 aa15.15■□□□□ 0.02
USF1-202ENST00000368020 SWSAP1Q6NVH7 229 aa15.15■□□□□ 0.02
USF1-202ENST00000368020 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.15■□□□□ 0.02
USF1-202ENST00000368020 ENOSF1Q7L5Y1 443 aa15.15■□□□□ 0.02
USF1-202ENST00000368020 GOLGA6L1Q8N7Z2 621 aa15.15■□□□□ 0.02
USF1-202ENST00000368020 CAPNS2Q96L46 248 aa15.15■□□□□ 0.02
USF1-202ENST00000368020 UBE2TQ9NPD8 197 aaPredicted RBP15.15■□□□□ 0.02
USF1-202ENST00000368020 GPRC5CQ9NQ84 441 aa15.15■□□□□ 0.02
USF1-202ENST00000368020 PRDM10Q9NQV6 1147 aa15.15■□□□□ 0.02
USF1-202ENST00000368020 RNF216Q9NWF9 866 aaPredicted RBP15.15■□□□□ 0.02
USF1-202ENST00000368020 MORF4L1Q9UBU8 362 aa15.15■□□□□ 0.02
USF1-202ENST00000368020 SEPT9Q9UHD8 586 aaPredicted RBP15.15■□□□□ 0.02
USF1-202ENST00000368020 SIP14410 1827 aa15.15■□□□□ 0.02
USF1-202ENST00000368020 CCDC188H7C350 402 aa15.14■□□□□ 0.01
USF1-202ENST00000368020 ZNF862O60290 1169 aa15.14■□□□□ 0.01
USF1-202ENST00000368020 CNMDO75829 334 aa15.14■□□□□ 0.01
USF1-202ENST00000368020 ATG7O95352 703 aa15.14■□□□□ 0.01
USF1-202ENST00000368020 ALDH1A1P00352 501 aa15.14■□□□□ 0.01
USF1-202ENST00000368020 GCLMP48507 274 aa15.14■□□□□ 0.01
USF1-202ENST00000368020 GPC3P51654 580 aa15.14■□□□□ 0.01
USF1-202ENST00000368020 PPP3CAQ08209 521 aa15.14■□□□□ 0.01
USF1-202ENST00000368020 PPP2R5EQ16537 467 aa15.14■□□□□ 0.01
USF1-202ENST00000368020 PAXIP1Q6ZW49 1069 aaPredicted RBP15.14■□□□□ 0.01
USF1-202ENST00000368020 DAAM2Q86T65 1068 aa15.14■□□□□ 0.01
USF1-202ENST00000368020 GLYCTKQ8IVS8 523 aa15.14■□□□□ 0.01
USF1-202ENST00000368020 ANKRD35Q8N283 1001 aa15.14■□□□□ 0.01
USF1-202ENST00000368020 USP38Q8NB14 1042 aa15.14■□□□□ 0.01
USF1-202ENST00000368020 SHCBP1Q8NEM2 672 aa15.14■□□□□ 0.01
USF1-202ENST00000368020 LNX1Q8TBB1 728 aaPredicted RBP15.14■□□□□ 0.01
USF1-202ENST00000368020 AENQ8WTP8 325 aaKnown RBP15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms