RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 HIST1H2ADP20671 130 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 AGXTP21549 392 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 PTPN9P43378 593 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 PTK2Q05397 1052 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 FAM110CQ1W6H9 321 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 MYLK4Q86YV6 388 aaPredicted RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 SRRM1Q8IYB3 904 aaKnown RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 FOXJ1Q92949 421 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 KCNB2Q92953 911 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 HIST1H2AHQ96KK5 128 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 CDCA3Q99618 268 aaPredicted RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 HIST1H2AJQ99878 128 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 H2AFJQ9BTM1 129 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 TRIT1Q9H3H1 467 aaKnown RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 SUDS3Q9H7L9 328 aaPredicted RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 ZFP14Q9HCL3 533 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 PRMT7Q9NVM4 692 aaPredicted RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 PA2G4Q9UQ80 394 aaKnown RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 SNX9Q9Y5X1 595 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 KLRF2D3W0D1 207 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 IFRD1O00458 451 aaPredicted RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 SPOPO43791 374 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 AVILO75366 819 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 HEXAP06865 529 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 GTF2E2P29084 291 aaKnown RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 RFC5P40937 340 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 GARSP41250 739 aaKnown RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 SELENOVP59797 346 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 CALCOCO2Q13137 446 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 PCNX4Q63HM2 1172 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 MAEAQ7L5Y9 396 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 C10orf67Q8IYJ2 551 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 MMGT1Q8N4V1 131 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 MAFAQ8NHW3 353 aaPredicted RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 U2AF1L4Q8WU68 220 aaKnown RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 BSNDQ8WZ55 320 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 CDKL2Q92772 493 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 COPS7BQ9H9Q2 264 aaPredicted RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 SP110Q9HB58 689 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 MCCC2Q9HCC0 563 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 MTRF1LQ9UGC7 380 aaKnown RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 BZW2Q9Y6E2 419 aaKnown RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 A0A087WZ62 844 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 TRAV19A0A0A6YYK7 116 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 CLDN3O15551 220 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 THAP12O43422 761 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 H2AFYO75367 372 aaKnown RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 PMPCBO75439 489 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 GCNT3O95395 438 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 RB1P06400 928 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 HPGDP15428 266 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 SELPP16109 830 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 ITGB6P18564 788 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 KCNA5P22460 613 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 ADSLP30566 484 aaPredicted RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 ACTN3Q08043 901 aaPredicted RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 MTMR1Q13613 665 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 PTGISQ16647 500 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 MTHFSDQ2M296 383 aaKnown RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 KAZNQ674X7 775 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 CNGA4Q8IV77 575 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 KLHL7Q8IXQ5 586 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 DEPDC4Q8N2C3 294 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 PNMA1Q8ND90 353 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 MYCBPAPQ8TBZ2 947 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 RHPN1Q8TCX5 695 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 METTL21AQ8WXB1 218 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 C17orf62Q9BQA9 187 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 SLC24A3Q9HC58 644 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 PCDHB5Q9Y5E4 795 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 A0A1W2PRG0 241 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 MTA2O94776 668 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 ANXA1P04083 346 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 GSTA1P08263 222 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 GSTA2P09210 222 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 SP2Q02086 613 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 LONRF1Q17RB8 773 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 USP41Q3LFD5 358 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 FOXD4L6Q3SYB3 417 aaPredicted RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 DCAF17Q5H9S7 520 aaPredicted RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 TJAP1Q5JTD0 557 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 FKBP1CQ5VVH2 108 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 FOXD4L3Q6VB84 417 aaPredicted RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 RBMS3Q6XE24 437 aaKnown RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 ZNF365Q70YC5 407 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 LPCAT2Q7L5N7 544 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 ACOT1Q86TX2 421 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 METTL3Q86U44 580 aaKnown RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 LRRN4CLQ8ND94 238 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 PABPC5Q96DU9 382 aaKnown RBP4.37□□□□□ -1.71
USH2A-202ENST00000366942 TRIM7Q9C029 511 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 NCKIPSDQ9NZQ3 722 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 SUPT3HB4E1H0 165 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 CHEK2O96017 543 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 ZNF24P17028 368 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 DNAJB2P25686 324 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 MAPK9P45984 424 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 NNTQ13423 1086 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 PPP1R7Q15435 360 aa4.37□□□□□ -1.71
USH2A-202ENST00000366942 MDH1BQ5I0G3 518 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms