RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 VAMP7P51809 220 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 SNAP25P60880 206 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 TEDDM1Q5T9Z0 273 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 KDM7AQ6ZMT4 941 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 C4orf33Q8N1A6 199 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 SLC44A5Q8NCS7 719 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 FBXL13Q8NEE6 735 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 APOL6Q9BWW8 343 aa20.75■□□□□ 0.91
CCDC88B-202ENST00000356786 CCNYL1Q8N7R7 359 aa20.74■□□□□ 0.91
CCDC88B-202ENST00000356786 USP38Q8NB14 1042 aa20.74■□□□□ 0.91
CCDC88B-202ENST00000356786 UBN1Q9NPG3 1134 aa20.74■□□□□ 0.91
CCDC88B-202ENST00000356786 M0QZ92 97 aa20.74■□□□□ 0.91
CCDC88B-202ENST00000356786 MAN1A2O60476 641 aa20.74■□□□□ 0.91
CCDC88B-202ENST00000356786 MSTO1Q9BUK6 570 aa20.74■□□□□ 0.91
CCDC88B-202ENST00000356786 CELF4Q9BZC1 486 aaKnown RBP20.74■□□□□ 0.91
CCDC88B-202ENST00000356786 ARSEP51690 589 aa20.74■□□□□ 0.91
CCDC88B-202ENST00000356786 DCP1AQ9NPI6 582 aaPredicted RBP20.74■□□□□ 0.91
CCDC88B-202ENST00000356786 PCSK1NQ9UHG2 260 aa20.74■□□□□ 0.91
CCDC88B-202ENST00000356786 FAM47DPA6NHR8 397 aa20.74■□□□□ 0.91
CCDC88B-202ENST00000356786 KLRC1P26715 233 aa20.74■□□□□ 0.91
CCDC88B-202ENST00000356786 MARK3P27448 753 aa20.74■□□□□ 0.91
CCDC88B-202ENST00000356786 ORC2Q13416 577 aaPredicted RBP20.74■□□□□ 0.91
CCDC88B-202ENST00000356786 CNGA3Q16281 694 aa20.74■□□□□ 0.91
CCDC88B-202ENST00000356786 KLC3Q6P597 504 aa20.74■□□□□ 0.91
CCDC88B-202ENST00000356786 SUN2Q9UH99 717 aa20.74■□□□□ 0.91
CCDC88B-202ENST00000356786 PCDHA6Q9UN73 950 aa20.74■□□□□ 0.91
CCDC88B-202ENST00000356786 PCDHA8Q9Y5H6 950 aa20.74■□□□□ 0.91
CCDC88B-202ENST00000356786 SYCE1LA8MT33 242 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 ZBTB5O15062 677 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 FRMD5Q7Z6J6 570 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 SLC35G2Q8TBE7 412 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 ANKS1AQ92625 1134 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 RBM15Q96T37 977 aaKnown RBP eCLIP20.73■□□□□ 0.914e-6■■■□□ 14.7
CCDC88B-202ENST00000356786 SNX5Q9Y5X3 404 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 ZNF609O15014 1411 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 ERVV-1B6SEH8 477 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 HSD17B3P37058 310 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 MDH1BQ5I0G3 518 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 RSRC2Q7L4I2 434 aaKnown RBP20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 JAMLQ86YT9 394 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 THAP11Q96EK4 314 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 ABCD1P33897 745 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 SYNE4Q8N205 404 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 GIPC2Q8TF65 315 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 CDHR2Q9BYE9 1310 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 CCDC90BQ9GZT6 254 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 GTSE1Q9NYZ3 720 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 OVOS2A0A0J9YW53 1432 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 OVOS2Q6IE36 1432 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 GOLGA8CPA6NN73 597 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 PHF2O75151 1096 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 SUPT3HO75486 399 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 HIF1AQ16665 826 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 PADI6Q6TGC4 694 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 BZW1Q7L1Q6 419 aaKnown RBP20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 TRAPPC11Q7Z392 1133 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 EXT2Q93063 718 aa20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 RANBP17Q9H2T7 1088 aaKnown RBP20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 MRPL40Q9NQ50 206 aaKnown RBP20.73■□□□□ 0.91
CCDC88B-202ENST00000356786 TNFAIP1Q13829 316 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 SLC29A2Q14542 456 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 MTBPQ96DY7 904 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 AGPAT1Q99943 283 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 LRRC4Q9HBW1 653 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 TNS3Q68CZ2 1445 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 UCHL3P15374 230 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 ALDH18A1P54886 795 aaKnown RBP20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 ANKMY2Q8IV38 441 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 SRBD1Q8N5C6 995 aaKnown RBP20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 FAM20AQ96MK3 541 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 GOLPH3Q9H4A6 298 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 AS3MTQ9HBK9 375 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 LZTS1Q9Y250 596 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 E2F6O75461 281 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 CALB1P05937 261 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 KLK7P49862 253 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 KCNQ4P56696 695 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 ERVK-24P63145 666 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 GRM4Q14833 912 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 KYNUQ16719 465 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 SUSD4Q5VX71 490 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 TSSK1BQ9BXA7 367 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 FNDC3AQ9Y2H6 1198 aaKnown RBP20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 CHEK2O96017 543 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 RBM43Q6ZSC3 357 aaKnown RBP20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 IGDCC4Q8TDY8 1250 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 ERP44Q9BS26 406 aa20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 POLR1AO95602 1720 aaPredicted RBP20.72■□□□□ 0.91
CCDC88B-202ENST00000356786 SERPINB3P29508 390 aa20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 GRM1Q13255 1194 aa20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 RHPN2Q8IUC4 686 aa20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 SH3RF3Q8TEJ3 882 aaPredicted RBP20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 DMGDHQ9UI17 866 aaKnown RBP20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 PAIP2BQ9ULR5 123 aaKnown RBP20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 L3MBTL1Q9Y468 752 aa20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 CPDO75976 1380 aa20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 SLC4A1P02730 911 aa20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 EIF2AK2P19525 551 aaKnown RBP20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 ITIH2P19823 946 aa20.71■□□□□ 0.91
CCDC88B-202ENST00000356786 GRIN1Q05586 938 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms