RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 LMNB1P20700 586 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 RFC4P35249 363 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 COILP38432 576 aaPredicted RBP7.29□□□□□ -1.24
VPS39-202ENST00000348544 STAT1P42224 750 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 TNNI2P48788 182 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 WDR4P57081 412 aaKnown RBP7.29□□□□□ -1.24
VPS39-202ENST00000348544 CYP1B1Q16678 543 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 UBE2SQ16763 222 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 RFWD3Q6PCD5 774 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 RHBDF2Q6PJF5 856 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 INTS8Q75QN2 995 aaKnown RBP7.29□□□□□ -1.24
VPS39-202ENST00000348544 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.29□□□□□ -1.24
VPS39-202ENST00000348544 EPM2AIP1Q7L775 607 aaPredicted RBP7.29□□□□□ -1.24
VPS39-202ENST00000348544 FBXO33Q7Z6M2 555 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 VSIG1Q86XK7 387 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 APLFQ8IW19 511 aaPredicted RBP7.29□□□□□ -1.24
VPS39-202ENST00000348544 B4GALNT2Q8NHY0 566 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 NRG4Q8WWG1 115 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 INPP5DQ92835 1189 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 KIFAP3Q92845 792 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 ZSWIM1Q9BR11 485 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 RGL1Q9NZL6 768 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 CHORDC1Q9UHD1 332 aaPredicted RBP7.29□□□□□ -1.24
VPS39-202ENST00000348544 USP20Q9Y2K6 914 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 NUMBLQ9Y6R0 609 aa7.29□□□□□ -1.24
VPS39-202ENST00000348544 TMEM110-MUSTN1A8MSY1 372 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 UBAP1LF5GYI3 381 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 YARSP54577 528 aaKnown RBP7.28□□□□□ -1.24
VPS39-202ENST00000348544 SLC12A3P55017 1021 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 KCNA1Q09470 495 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 MOGSQ13724 837 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 DRAP1Q14919 205 aaPredicted RBP7.28□□□□□ -1.24
VPS39-202ENST00000348544 KYNUQ16719 465 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 KNOP1Q1ED39 458 aaKnown RBP7.28□□□□□ -1.24
VPS39-202ENST00000348544 WASHC2DQ5SRD0 308 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 IRGCQ6NXR0 463 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 ZNF449Q6P9G9 518 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 CYFIP1Q7L576 1253 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 SFR1Q86XK3 245 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 SRRM1Q8IYB3 904 aaKnown RBP7.28□□□□□ -1.24
VPS39-202ENST00000348544 CCDC105Q8IYK2 499 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 MARCH10Q8NA82 808 aaPredicted RBP7.28□□□□□ -1.24
VPS39-202ENST00000348544 RBBP8NLQ8NC74 664 aaPredicted RBP7.28□□□□□ -1.24
VPS39-202ENST00000348544 PITPNM3Q9BZ71 974 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 TRIM4Q9C037 500 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 SLCO1B3Q9NPD5 702 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.28□□□□□ -1.24
VPS39-202ENST00000348544 TBK1Q9UHD2 729 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 DDX25Q9UHL0 483 aaKnown RBP7.28□□□□□ -1.24
VPS39-202ENST00000348544 MINPP1Q9UNW1 487 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 LAMB2P55268 1798 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 MAST2Q6P0Q8 1798 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 FRMPD4Q14CM0 1322 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 SPATA31A1Q5TZJ5 1347 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 MROH7Q68CQ1 1323 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 ADGRA3Q8IWK6 1321 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 USP17L5A8MUK1 530 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 CLIC2O15247 247 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 NVLO15381 856 aaKnown RBP7.28□□□□□ -1.24
VPS39-202ENST00000348544 MED24O75448 989 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 NR3C1P04150 777 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 HSPA6P17066 643 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 STAT3P40763 770 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 ADCY7P51828 1080 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 RBM5P52756 815 aaKnown RBP eCLIP7.28□□□□□ -1.24
VPS39-202ENST00000348544 POLE2P56282 527 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 DNAJC3Q13217 504 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 TSNAXIP1Q2TAA8 658 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 KHDC1Q4VXA5 237 aaKnown RBP7.28□□□□□ -1.24
VPS39-202ENST00000348544 MIGA2Q7L4E1 593 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 APBB1IPQ7Z5R6 666 aaPredicted RBP7.28□□□□□ -1.24
VPS39-202ENST00000348544 PRUNE1Q86TP1 453 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 ZNF444Q8N0Y2 327 aaPredicted RBP7.28□□□□□ -1.24
VPS39-202ENST00000348544 PWWP2AQ96N64 755 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 NT5C3AQ9H0P0 336 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 TFCP2L1Q9NZI6 479 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 DNAJC12Q9UKB3 198 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 SH3BP1Q9Y3L3 701 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 ARFGEF1Q9Y6D6 1849 aa7.28□□□□□ -1.24
VPS39-202ENST00000348544 PASKQ96RG2 1323 aa7.27□□□□□ -1.24
VPS39-202ENST00000348544 POTEFA5A3E0 1075 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 ANKRD62A6NC57 917 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 LGR5O75473 907 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 ATP5HO75947 161 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 TTC4O95801 387 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 POTEIP0CG38 1075 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 RXRBP28702 533 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 SSR1P43307 286 aaKnown RBP7.27□□□□□ -1.25
VPS39-202ENST00000348544 SESN3P58005 492 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 PSMC6P62333 389 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 GIT2Q14161 759 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 LLGL1Q15334 1064 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 CLUL1Q15846 466 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 MUM1Q2TAK8 710 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 ZC2HC1CQ53FD0 456 aaPredicted RBP7.27□□□□□ -1.25
VPS39-202ENST00000348544 SPTY2D1Q68D10 685 aaPredicted RBP7.27□□□□□ -1.25
VPS39-202ENST00000348544 C11orf63Q6NUN7 778 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 POTEGQ6S5H5 508 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 POTEEQ6S8J3 1075 aa7.27□□□□□ -1.25
VPS39-202ENST00000348544 ARHGEF18Q6ZSZ5 1173 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms