RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 GABBR1Q9UBS5 961 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 LCMT1Q9UIC8 334 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 CNOT7Q9UIV1 285 aaKnown RBP16.69■□□□□ 0.26
UPF3B-202ENST00000345865 NOCTQ9UK39 431 aaKnown RBP16.69■□□□□ 0.26
UPF3B-202ENST00000345865 ZNF214Q9UL59 606 aaPredicted RBP16.69■□□□□ 0.26
UPF3B-202ENST00000345865 USP20Q9Y2K6 914 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 PCDHA10Q9Y5I2 948 aa16.69■□□□□ 0.26
UPF3B-202ENST00000345865 BRCA1P38398 1863 aaKnown RBP16.68■□□□□ 0.26
UPF3B-202ENST00000345865 ZNFX1Q9P2E3 1918 aaKnown RBP16.68■□□□□ 0.26
UPF3B-202ENST00000345865 PMM2O15305 246 aa16.68■□□□□ 0.26
UPF3B-202ENST00000345865 KCNA2P16389 499 aa16.68■□□□□ 0.26
UPF3B-202ENST00000345865 PTPRAP18433 802 aa16.68■□□□□ 0.26
UPF3B-202ENST00000345865 COPB2P35606 906 aa16.68■□□□□ 0.26
UPF3B-202ENST00000345865 HSPA9P38646 679 aaKnown RBP16.68■□□□□ 0.26
UPF3B-202ENST00000345865 HMGCS2P54868 508 aa16.68■□□□□ 0.26
UPF3B-202ENST00000345865 SNRNP48Q6IEG0 339 aaKnown RBP16.68■□□□□ 0.26
UPF3B-202ENST00000345865 AADACL2Q6P093 401 aa16.68■□□□□ 0.26
UPF3B-202ENST00000345865 ADAT2Q7Z6V5 191 aaKnown RBP16.68■□□□□ 0.26
UPF3B-202ENST00000345865 SLC47A2Q86VL8 602 aa16.68■□□□□ 0.26
UPF3B-202ENST00000345865 FAM71AQ8IYT1 594 aa16.68■□□□□ 0.26
UPF3B-202ENST00000345865 FAM84AQ96KN4 292 aa16.68■□□□□ 0.26
UPF3B-202ENST00000345865 ERVK-5Q9HDB9 667 aa16.68■□□□□ 0.26
UPF3B-202ENST00000345865 TMOD4Q9NZQ9 345 aa16.68■□□□□ 0.26
UPF3B-202ENST00000345865 TCEAL9Q9UHQ7 104 aa16.68■□□□□ 0.26
UPF3B-202ENST00000345865 ALG6Q9Y672 507 aa16.68■□□□□ 0.26
UPF3B-202ENST00000345865 CYP26A1O43174 497 aa16.68■□□□□ 0.26
UPF3B-202ENST00000345865 RPS12P25398 132 aaKnown RBP16.68■□□□□ 0.26
UPF3B-202ENST00000345865 SNRPFP62306 86 aaKnown RBP16.68■□□□□ 0.26
UPF3B-202ENST00000345865 UAP1Q16222 522 aaPredicted RBP16.68■□□□□ 0.26
UPF3B-202ENST00000345865 TTC19Q6DKK2 380 aaPredicted RBP16.68■□□□□ 0.26
UPF3B-202ENST00000345865 NLRX1Q86UT6 975 aa16.68■□□□□ 0.26
UPF3B-202ENST00000345865 SCYL3Q8IZE3 742 aa16.68■□□□□ 0.26
UPF3B-202ENST00000345865 PPM1KQ8N3J5 372 aa16.68■□□□□ 0.26
UPF3B-202ENST00000345865 RNPC3Q96LT9 517 aaKnown RBP16.68■□□□□ 0.26
UPF3B-202ENST00000345865 GJA3Q9Y6H8 435 aa16.68■□□□□ 0.26
UPF3B-202ENST00000345865 ARID2Q68CP9 1835 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 DAPK3O43293 454 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 SORBS3O60504 671 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 CCND2P30279 289 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 IRAK1P51617 712 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 HADHBP55084 474 aaKnown RBP16.67■□□□□ 0.26
UPF3B-202ENST00000345865 DMP1Q13316 513 aaPredicted RBP16.67■□□□□ 0.26
UPF3B-202ENST00000345865 PRPF4BQ13523 1007 aaKnown RBP16.67■□□□□ 0.26
UPF3B-202ENST00000345865 CUL1Q13616 776 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 TMEM132BQ14DG7 1078 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 EIF1ADQ8N9N8 165 aaKnown RBP16.67■□□□□ 0.26
UPF3B-202ENST00000345865 ZNF280CQ8ND82 737 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 KRT35Q92764 455 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 CEP170P1Q96L14 293 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 WRNIP1Q96S55 665 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 IWS1Q96ST2 819 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 SENP7Q9BQF6 1050 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 NTPCRQ9BSD7 190 aaKnown RBP16.67■□□□□ 0.26
UPF3B-202ENST00000345865 KMT5AQ9NQR1 393 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 PHIPQ8WWQ0 1821 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 ATMINO43313 823 aaPredicted RBP16.67■□□□□ 0.26
UPF3B-202ENST00000345865 MARCKSL1P49006 195 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 SMTNP53814 917 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 SP4Q02446 784 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 SWSAP1Q6NVH7 229 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 HELQQ8TDG4 1101 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 TAS1R2Q8TE23 839 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 SHC3Q92529 594 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 GPRASP2Q96D09 838 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 CARD9Q9H257 536 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 SLITRK6Q9H5Y7 841 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 XPNPEP1Q9NQW7 623 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 PDLIM7Q9NR12 457 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 ZNF112Q9UJU3 913 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 ADAMTS5Q9UNA0 930 aa16.67■□□□□ 0.26
UPF3B-202ENST00000345865 GRIN2DO15399 1336 aa16.66■□□□□ 0.26
UPF3B-202ENST00000345865 CLSTN1O94985 981 aa16.66■□□□□ 0.26
UPF3B-202ENST00000345865 IVLP07476 585 aa16.66■□□□□ 0.26
UPF3B-202ENST00000345865 MMEP08473 750 aa16.66■□□□□ 0.26
UPF3B-202ENST00000345865 HSD17B3P37058 310 aa16.66■□□□□ 0.26
UPF3B-202ENST00000345865 BAG6P46379 1132 aa16.66■□□□□ 0.26
UPF3B-202ENST00000345865 FMO1Q01740 532 aa16.66■□□□□ 0.26
UPF3B-202ENST00000345865 AEBP2Q6ZN18 517 aaPredicted RBP16.66■□□□□ 0.26
UPF3B-202ENST00000345865 CPNE8Q86YQ8 564 aa16.66■□□□□ 0.26
UPF3B-202ENST00000345865 CCDC60Q8IWA6 550 aaPredicted RBP16.66■□□□□ 0.26
UPF3B-202ENST00000345865 CD302Q8IX05 232 aa16.66■□□□□ 0.26
UPF3B-202ENST00000345865 RHOT2Q8IXI1 618 aa16.66■□□□□ 0.26
UPF3B-202ENST00000345865 SEC14L1Q92503 715 aa16.66■□□□□ 0.26
UPF3B-202ENST00000345865 FBXL18Q96ME1 805 aa16.66■□□□□ 0.26
UPF3B-202ENST00000345865 CTTNBP2NLQ9P2B4 639 aa16.66■□□□□ 0.26
UPF3B-202ENST00000345865 PLAAQ9Y263 795 aa16.66■□□□□ 0.26
UPF3B-202ENST00000345865 COQ4Q9Y3A0 265 aa16.66■□□□□ 0.26
UPF3B-202ENST00000345865 FDX1P10109 184 aa16.65■□□□□ 0.26
UPF3B-202ENST00000345865 DSG3P32926 999 aa16.65■□□□□ 0.26
UPF3B-202ENST00000345865 GPC5P78333 572 aa16.65■□□□□ 0.26
UPF3B-202ENST00000345865 KRT39Q6A163 491 aa16.65■□□□□ 0.26
UPF3B-202ENST00000345865 TAS1R3Q7RTX0 852 aa16.65■□□□□ 0.26
UPF3B-202ENST00000345865 RDM1Q8NG50 284 aa16.65■□□□□ 0.26
UPF3B-202ENST00000345865 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.65■□□□□ 0.26
UPF3B-202ENST00000345865 TRIM51Q9BSJ1 452 aa16.65■□□□□ 0.26
UPF3B-202ENST00000345865 CAPS2Q9BXY5 557 aa16.65■□□□□ 0.26
UPF3B-202ENST00000345865 CWC15Q9P013 229 aaKnown RBP16.65■□□□□ 0.26
UPF3B-202ENST00000345865 EXOC7Q9UPT5 735 aa16.65■□□□□ 0.26
UPF3B-202ENST00000345865 H0YGN5 161 aa16.65■□□□□ 0.26
UPF3B-202ENST00000345865 TULP2O00295 520 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 1073.2 ms