RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 SCP2P22307 547 aa21.12■□□□□ 0.97
SYNE4-202ENST00000340477 PPM1AP35813 382 aa21.12■□□□□ 0.97
SYNE4-202ENST00000340477 CACNB1Q02641 598 aaPredicted RBP21.12■□□□□ 0.97
SYNE4-202ENST00000340477 DCAF4L1Q3SXM0 396 aa21.12■□□□□ 0.97
SYNE4-202ENST00000340477 COLGALT1Q8NBJ5 622 aa21.12■□□□□ 0.97
SYNE4-202ENST00000340477 MRPL38Q96DV4 380 aaKnown RBP21.12■□□□□ 0.97
SYNE4-202ENST00000340477 ZNF558Q96NG5 402 aa21.12■□□□□ 0.97
SYNE4-202ENST00000340477 EIF2AQ9BY44 585 aaKnown RBP21.12■□□□□ 0.97
SYNE4-202ENST00000340477 MRPL4Q9BYD3 311 aaKnown RBP21.12■□□□□ 0.97
SYNE4-202ENST00000340477 FAM13BQ9NYF5 915 aa21.12■□□□□ 0.97
SYNE4-202ENST00000340477 ARHGAP28Q9P2N2 729 aa21.12■□□□□ 0.97
SYNE4-202ENST00000340477 KANSL3Q9P2N6 904 aa21.12■□□□□ 0.97
SYNE4-202ENST00000340477 NPHP3-ACAD11A0A0J9YXS1 232 aa21.11■□□□□ 0.97
SYNE4-202ENST00000340477 SFI1A8K8P3 1242 aa21.11■□□□□ 0.97
SYNE4-202ENST00000340477 SLC16A4O15374 487 aa21.11■□□□□ 0.97
SYNE4-202ENST00000340477 LINC00271P0C7V0 271 aa21.11■□□□□ 0.97
SYNE4-202ENST00000340477 ABCD1P33897 745 aa21.11■□□□□ 0.97
SYNE4-202ENST00000340477 NUCB2P80303 420 aa21.11■□□□□ 0.97
SYNE4-202ENST00000340477 SKIV2LQ15477 1246 aaKnown RBP21.11■□□□□ 0.97
SYNE4-202ENST00000340477 CCDC85BQ15834 202 aaPredicted RBP21.11■□□□□ 0.97
SYNE4-202ENST00000340477 ARSHQ5FYA8 562 aa21.11■□□□□ 0.97
SYNE4-202ENST00000340477 ATF7IP2Q5U623 682 aa21.11■□□□□ 0.97
SYNE4-202ENST00000340477 MYCT1Q8N699 235 aa21.11■□□□□ 0.97
SYNE4-202ENST00000340477 PDILTQ8N807 584 aa21.11■□□□□ 0.97
SYNE4-202ENST00000340477 FAM193BQ96PV7 902 aaPredicted RBP21.11■□□□□ 0.97
SYNE4-202ENST00000340477 APOL6Q9BWW8 343 aa21.11■□□□□ 0.97
SYNE4-202ENST00000340477 LRRC27Q9C0I9 530 aa21.11■□□□□ 0.97
SYNE4-202ENST00000340477 PDZD7Q9H5P4 517 aa21.11■□□□□ 0.97
SYNE4-202ENST00000340477 AGMOQ6ZNB7 445 aa21.1■□□□□ 0.97
SYNE4-202ENST00000340477 CDR2LQ86X02 465 aaPredicted RBP21.1■□□□□ 0.97
SYNE4-202ENST00000340477 KLHL23Q8NBE8 558 aa21.1■□□□□ 0.97
SYNE4-202ENST00000340477 SMG8Q8ND04 991 aaKnown RBP21.1■□□□□ 0.97
SYNE4-202ENST00000340477 SLC17A8Q8NDX2 589 aa21.1■□□□□ 0.97
SYNE4-202ENST00000340477 SPATA32Q96LK8 384 aa21.1■□□□□ 0.97
SYNE4-202ENST00000340477 PYM1Q9BRP8 204 aaKnown RBP21.1■□□□□ 0.97
SYNE4-202ENST00000340477 PANK2Q9BZ23 570 aa21.1■□□□□ 0.97
SYNE4-202ENST00000340477 CUEDC2Q9H467 287 aa21.1■□□□□ 0.97
SYNE4-202ENST00000340477 CWH43Q9H720 699 aa21.1■□□□□ 0.97
SYNE4-202ENST00000340477 PRRC2BQ5JSZ5 2229 aaKnown RBP21.1■□□□□ 0.97
SYNE4-202ENST00000340477 ZMYM2Q9UBW7 1377 aa21.1■□□□□ 0.97
SYNE4-202ENST00000340477 K7ENM7 598 aa21.09■□□□□ 0.97
SYNE4-202ENST00000340477 ZC3H11AO75152 810 aaKnown RBP eCLIP21.09■□□□□ 0.97
SYNE4-202ENST00000340477 OFD1O75665 1012 aa21.09■□□□□ 0.97
SYNE4-202ENST00000340477 ALDH7A1P49419 539 aaKnown RBP21.09■□□□□ 0.97
SYNE4-202ENST00000340477 UBE3AQ05086 875 aa21.09■□□□□ 0.97
SYNE4-202ENST00000340477 GIT2Q14161 759 aa21.09■□□□□ 0.97
SYNE4-202ENST00000340477 KCNT2Q6UVM3 1135 aa21.09■□□□□ 0.97
SYNE4-202ENST00000340477 LRRC15Q8TF66 581 aa21.09■□□□□ 0.97
SYNE4-202ENST00000340477 PPP2R3CQ969Q6 453 aa21.09■□□□□ 0.97
SYNE4-202ENST00000340477 RPS6KC1Q96S38 1066 aa21.09■□□□□ 0.97
SYNE4-202ENST00000340477 NTPCRQ9BSD7 190 aaKnown RBP21.09■□□□□ 0.97
SYNE4-202ENST00000340477 NXF3Q9H4D5 531 aaKnown RBP21.09■□□□□ 0.97
SYNE4-202ENST00000340477 TBC1D13Q9NVG8 400 aa21.09■□□□□ 0.97
SYNE4-202ENST00000340477 PARP2Q9UGN5 583 aa21.09■□□□□ 0.97
SYNE4-202ENST00000340477 RCOR1Q9UKL0 485 aa21.09■□□□□ 0.97
SYNE4-202ENST00000340477 PLAGL2Q9UPG8 496 aa21.09■□□□□ 0.97
SYNE4-202ENST00000340477 GIT1Q9Y2X7 761 aa21.09■□□□□ 0.97
SYNE4-202ENST00000340477 TDRD15B5MCY1 1934 aaKnown RBP21.09■□□□□ 0.97
SYNE4-202ENST00000340477 MEIS3P2A8K0S8 358 aa21.08■□□□□ 0.97
SYNE4-202ENST00000340477 ANP32AP39687 249 aaKnown RBP21.08■□□□□ 0.97
SYNE4-202ENST00000340477 ZNF131P52739 623 aa21.08■□□□□ 0.97
SYNE4-202ENST00000340477 KRT17Q04695 432 aa21.08■□□□□ 0.97
SYNE4-202ENST00000340477 ZNF568Q3ZCX4 644 aa21.08■□□□□ 0.97
SYNE4-202ENST00000340477 LRRC55Q6ZSA7 311 aa21.08■□□□□ 0.97
SYNE4-202ENST00000340477 FAM178BQ8IXR5 827 aa21.08■□□□□ 0.97
SYNE4-202ENST00000340477 IQUBQ8NA54 791 aa21.08■□□□□ 0.97
SYNE4-202ENST00000340477 BICD1Q96G01 975 aa21.08■□□□□ 0.97
SYNE4-202ENST00000340477 SCAND2PQ9GZW5 306 aaPredicted RBP21.08■□□□□ 0.97
SYNE4-202ENST00000340477 GBP3Q9H0R5 595 aa21.08■□□□□ 0.97
SYNE4-202ENST00000340477 ALG13Q9NP73 1137 aaKnown RBP21.08■□□□□ 0.97
SYNE4-202ENST00000340477 HCSTQ9UBK5 93 aa21.08■□□□□ 0.97
SYNE4-202ENST00000340477 PUF60Q9UHX1 559 aaKnown RBP21.08■□□□□ 0.97
SYNE4-202ENST00000340477 PCDHA7Q9UN72 937 aa21.08■□□□□ 0.97
SYNE4-202ENST00000340477 TNFSF13BQ9Y275 285 aa21.08■□□□□ 0.97
SYNE4-202ENST00000340477 ZDHHC9Q9Y397 364 aa21.08■□□□□ 0.97
SYNE4-202ENST00000340477 HES2Q9Y543 173 aa21.08■□□□□ 0.97
SYNE4-202ENST00000340477 PLXNA4Q9HCM2 1894 aa21.07■□□□□ 0.96
SYNE4-202ENST00000340477 GRM6O15303 877 aa21.07■□□□□ 0.96
SYNE4-202ENST00000340477 TRAK2O60296 914 aa21.07■□□□□ 0.96
SYNE4-202ENST00000340477 FGF18O76093 207 aa21.07■□□□□ 0.96
SYNE4-202ENST00000340477 ITGB1P05556 798 aa21.07■□□□□ 0.96
SYNE4-202ENST00000340477 MAPTP10636 758 aaKnown RBP21.07■□□□□ 0.96
SYNE4-202ENST00000340477 GAP43P17677 238 aa21.07■□□□□ 0.96
SYNE4-202ENST00000340477 MLH1P40692 756 aa21.07■□□□□ 0.96
SYNE4-202ENST00000340477 NCKAP1LP55160 1127 aa21.07■□□□□ 0.96
SYNE4-202ENST00000340477 AMPD3Q01432 767 aa21.07■□□□□ 0.96
SYNE4-202ENST00000340477 NT5DC1Q5TFE4 455 aa21.07■□□□□ 0.96
SYNE4-202ENST00000340477 SHC4Q6S5L8 630 aa21.07■□□□□ 0.96
SYNE4-202ENST00000340477 DYMQ7RTS9 669 aa21.07■□□□□ 0.96
SYNE4-202ENST00000340477 TMEM161BQ8NDZ6 487 aa21.07■□□□□ 0.96
SYNE4-202ENST00000340477 DDX12PQ92771 950 aa21.07■□□□□ 0.96
SYNE4-202ENST00000340477 DHX58Q96C10 678 aa21.07■□□□□ 0.96
SYNE4-202ENST00000340477 TCHPQ9BT92 498 aa21.07■□□□□ 0.96
SYNE4-202ENST00000340477 TNMDQ9H2S6 317 aa21.07■□□□□ 0.96
SYNE4-202ENST00000340477 NSUN3Q9H649 340 aaKnown RBP21.07■□□□□ 0.96
SYNE4-202ENST00000340477 MAGEF1Q9HAY2 307 aa21.07■□□□□ 0.96
SYNE4-202ENST00000340477 SPG21Q9NZD8 308 aa21.07■□□□□ 0.96
SYNE4-202ENST00000340477 ARL5CA6NH57 179 aa21.06■□□□□ 0.96
SYNE4-202ENST00000340477 NR1I2O75469 434 aa21.06■□□□□ 0.96
SYNE4-202ENST00000340477 CSPG5O95196 566 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms