RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 CCDC33Q8N5R6 958 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 HDAC7Q8WUI4 952 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 ANKRD36BP1Q96IX9 119 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 LRRC4Q9HBW1 653 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 SARS2Q9NP81 518 aaKnown RBP9.23□□□□□ -0.93
RTN3-202ENST00000339997 OLA1Q9NTK5 396 aaKnown RBP9.23□□□□□ -0.93
RTN3-202ENST00000339997 KLHL8Q9P2G9 620 aaPredicted RBP9.23□□□□□ -0.93
RTN3-202ENST00000339997 ZFYVE16Q7Z3T8 1539 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 DENND3A2RUS2 1198 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 ATP9BO43861 1147 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 ANTXR2P58335 489 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 MUM1L1Q5H9M0 696 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 SYDE2Q5VT97 1194 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 NBPF10Q6P3W6 841 aaKnown RBP9.23□□□□□ -0.93
RTN3-202ENST00000339997 DGKHQ86XP1 1220 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 RBM15Q96T37 977 aaKnown RBP eCLIP9.23□□□□□ -0.934e-7■■■□□ 16.7
RTN3-202ENST00000339997 BEGAINQ9BUH8 593 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 WDR11Q9BZH6 1224 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 UPF3AQ9H1J1 476 aaKnown RBP9.23□□□□□ -0.93
RTN3-202ENST00000339997 NRBP2Q9NSY0 501 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 THEGQ9P2T0 379 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 SFMBT1Q9UHJ3 866 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 A0A0U1RQJ8 604 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 H3BRJ5 948 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 XPO1O14980 1071 aaKnown RBP9.23□□□□□ -0.93
RTN3-202ENST00000339997 TPST1O60507 370 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 GRAP2O75791 330 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 CD44P16070 742 aaKnown RBP9.23□□□□□ -0.93
RTN3-202ENST00000339997 ATP2B4P23634 1241 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 NFX1Q12986 1120 aaKnown RBP9.23□□□□□ -0.93
RTN3-202ENST00000339997 EP400NLQ6ZTU2 488 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 PDZD4Q76G19 769 aaPredicted RBP9.23□□□□□ -0.93
RTN3-202ENST00000339997 LRRC34Q8IZ02 419 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 TTC30BQ8N4P2 665 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 DACH2Q96NX9 599 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 METTL5Q9NRN9 209 aaKnown RBP9.23□□□□□ -0.93
RTN3-202ENST00000339997 PRDM4Q9UKN5 801 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 TRAF3IP3Q9Y228 551 aa9.23□□□□□ -0.93
RTN3-202ENST00000339997 ENO3P13929 434 aaPredicted RBP9.22□□□□□ -0.93
RTN3-202ENST00000339997 PMLP29590 882 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 GNL1P36915 607 aaPredicted RBP9.22□□□□□ -0.93
RTN3-202ENST00000339997 ATP2C1P98194 919 aaPredicted RBP9.22□□□□□ -0.93
RTN3-202ENST00000339997 MORF4L2Q15014 288 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 TRIP10Q15642 601 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 CYB5D1Q6P9G0 228 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 LAYNQ6UX15 382 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 RFWD2Q8NHY2 731 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 ACAP3Q96P50 834 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 INTS2Q9H0H0 1204 aaKnown RBP9.22□□□□□ -0.93
RTN3-202ENST00000339997 NOD2Q9HC29 1040 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 SLC9A2Q9UBY0 812 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 ABCB11O95342 1321 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 SYNMO15061 1565 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.22□□□□□ -0.93
RTN3-202ENST00000339997 APBA3O96018 575 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 APRTP07741 180 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 TYK2P29597 1187 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 P3H1Q32P28 736 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 ADSSL1Q8N142 457 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 ENGASEQ8NFI3 743 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 ELMO3Q96BJ8 720 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 PACSIN1Q9BY11 444 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 HPS4Q9NQG7 708 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 L1RE1Q9UN81 338 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 USP15Q9Y4E8 981 aaPredicted RBP9.22□□□□□ -0.93
RTN3-202ENST00000339997 ERBB3P21860 1342 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 MYMKA6NI61 221 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 MIF4GDA9UHW6 222 aaKnown RBP9.22□□□□□ -0.93
RTN3-202ENST00000339997 H2AFXP16104 143 aaPredicted RBP9.22□□□□□ -0.93
RTN3-202ENST00000339997 KLC1Q07866 573 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 DPYDQ12882 1025 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 SZRD1Q7Z422 152 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 ATG4AQ8WYN0 398 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 KCNB2Q92953 911 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 TMA16Q96EY4 203 aaKnown RBP9.22□□□□□ -0.93
RTN3-202ENST00000339997 SERPINI1Q99574 410 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 TDRD3Q9H7E2 651 aaKnown RBP9.22□□□□□ -0.93
RTN3-202ENST00000339997 ZNF277Q9NRM2 450 aaPredicted RBP9.22□□□□□ -0.93
RTN3-202ENST00000339997 ARL2BPQ9Y2Y0 163 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 NRXN1Q9ULB1 1477 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 TARSL2A2RTX5 802 aaKnown RBP9.22□□□□□ -0.93
RTN3-202ENST00000339997 SYCE1LA8MT33 242 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 B2RBV5 119 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 AIM2O14862 343 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 KRT38O76015 456 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 CHRNA3P32297 505 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 HSPA9P38646 679 aaKnown RBP9.22□□□□□ -0.93
RTN3-202ENST00000339997 IL6STP40189 918 aaPredicted RBP9.22□□□□□ -0.93
RTN3-202ENST00000339997 VAMP7P51809 220 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 AP2B1P63010 937 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 KCNA1Q09470 495 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 ZBTB17Q13105 803 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 BYSLQ13895 437 aaKnown RBP9.22□□□□□ -0.93
RTN3-202ENST00000339997 SLC18A3Q16572 532 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 SMTNL2Q2TAL5 461 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 GUF1Q8N442 669 aaKnown RBP9.22□□□□□ -0.93
RTN3-202ENST00000339997 CNKSR1Q969H4 720 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 TMEM117Q9H0C3 514 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 XDHP47989 1333 aa9.22□□□□□ -0.93
RTN3-202ENST00000339997 UCHL3P15374 230 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms