RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 KLHL20Q9Y2M5 609 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 CCDC188H7C350 402 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 ALDH6A1Q02252 535 aaKnown RBP13.56□□□□□ -0.24
USP47-202ENST00000339865 CAV1Q03135 178 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 PPARAQ07869 468 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 COX10Q12887 443 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 CTTNQ14247 550 aaKnown RBP13.56□□□□□ -0.24
USP47-202ENST00000339865 TRIP10Q15642 601 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 GCOM2Q9BZD3 368 aaPredicted RBP13.56□□□□□ -0.24
USP47-202ENST00000339865 RWDD2AQ9UIY3 292 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 HECW1Q76N89 1606 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 PDZK1P1A8MUH7 402 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 ZAP70P43403 619 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 NFIL3Q16649 462 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 CABLES1Q8TDN4 633 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 OSBPL9Q96SU4 736 aa13.56□□□□□ -0.24
USP47-202ENST00000339865 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.56□□□□□ -0.24
USP47-202ENST00000339865 YWHABP31946 246 aaKnown RBP13.55□□□□□ -0.24
USP47-202ENST00000339865 DNAJC9Q8WXX5 260 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 HES6Q96HZ4 224 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 TLR2O60603 784 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 ACCSLQ4AC99 568 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 SLC25A24Q6NUK1 477 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 UBASH3BQ8TF42 649 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 LRRC59Q96AG4 307 aaKnown RBP13.55□□□□□ -0.24
USP47-202ENST00000339865 POLR3EQ9NVU0 708 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 CCNL1Q9UK58 526 aaPredicted RBP13.55□□□□□ -0.24
USP47-202ENST00000339865 ZNF394Q53GI3 561 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 MARCOQ9UEW3 520 aaPredicted RBP13.55□□□□□ -0.24
USP47-202ENST00000339865 ADGRA2Q96PE1 1338 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 LRRIQ3A6PVS8 624 aaPredicted RBP13.55□□□□□ -0.24
USP47-202ENST00000339865 USP17L12C9JPN9 530 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 USP17L21D6R901 530 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 EYA2O00167 538 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 RALBP11234 206 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 USP39Q53GS9 565 aaKnown RBP13.55□□□□□ -0.24
USP47-202ENST00000339865 NAALADL2Q58DX5 795 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 ZNF786Q8N393 782 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 QKIQ96PU8 341 aaKnown RBP eCLIP13.55□□□□□ -0.24
USP47-202ENST00000339865 WDR7Q9Y4E6 1490 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 RAPGEF3O95398 923 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 GPR141Q7Z602 305 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 PANX2Q96RD6 677 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 IPPQ9Y573 584 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 HSPA9P38646 679 aaKnown RBP13.55□□□□□ -0.24
USP47-202ENST00000339865 KRT74Q7RTS7 529 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 CALML6Q8TD86 181 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 ASIC4Q96FT7 647 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 MAGEF1Q9HAY2 307 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 USP21Q9UK80 565 aa13.55□□□□□ -0.24
USP47-202ENST00000339865 TEX28O15482 410 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 ZBED8Q8IZ13 594 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 MAGEB10Q96LZ2 347 aaPredicted RBP13.54□□□□□ -0.24
USP47-202ENST00000339865 TRIM24O15164 1050 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 C11orf57Q6ZUT1 292 aaPredicted RBP13.54□□□□□ -0.24
USP47-202ENST00000339865 VN1R5Q7Z5H4 357 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 USP40Q9NVE5 1235 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 HSMCR30P0CW71 290 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 KLHL12Q53G59 568 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 MFSD4BQ5TF39 518 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 NEK10Q6ZWH5 1172 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 WWP1Q9H0M0 922 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 RPF1Q9H9Y2 349 aaKnown RBP13.54□□□□□ -0.24
USP47-202ENST00000339865 ARL2BPQ9Y2Y0 163 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 ABCC5O15440 1437 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 SERPINH1P50454 418 aaKnown RBP13.54□□□□□ -0.24
USP47-202ENST00000339865 PDIA2Q13087 525 aaKnown RBP13.54□□□□□ -0.24
USP47-202ENST00000339865 NCF4Q15080 339 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 ZNF568Q3ZCX4 644 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 KRT78Q8N1N4 520 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 FANCBQ8NB91 859 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 PCYOX1LQ8NBM8 494 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 OLFM1Q99784 485 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 C19orf44Q9H6X5 657 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 ACEP12821 1306 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 TCP10L2B9ZVM9 353 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 CTCFP49711 727 aaPredicted RBP13.54□□□□□ -0.24
USP47-202ENST00000339865 MXI1P50539 228 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 CERKLQ49MI3 558 aaPredicted RBP13.54□□□□□ -0.24
USP47-202ENST00000339865 C16orf89Q6UX73 402 aa13.54□□□□□ -0.24
USP47-202ENST00000339865 ZNF496Q96IT1 587 aaPredicted RBP13.54□□□□□ -0.24
USP47-202ENST00000339865 CFAP99D6REC4 459 aa13.53□□□□□ -0.24
USP47-202ENST00000339865 TRIM66O15016 1216 aa13.53□□□□□ -0.24
USP47-202ENST00000339865 GAP43P17677 238 aa13.53□□□□□ -0.24
USP47-202ENST00000339865 FEN1P39748 380 aaKnown RBP13.53□□□□□ -0.24
USP47-202ENST00000339865 ZSWIM7Q19AV6 140 aa13.53□□□□□ -0.24
USP47-202ENST00000339865 ZCWPW2Q504Y3 356 aa13.53□□□□□ -0.24
USP47-202ENST00000339865 TAF1DQ9H5J8 278 aaPredicted RBP13.53□□□□□ -0.24
USP47-202ENST00000339865 POLG2Q9UHN1 485 aa13.53□□□□□ -0.24
USP47-202ENST00000339865 PDZK1Q5T2W1 519 aa13.53□□□□□ -0.24
USP47-202ENST00000339865 ALKBH5Q6P6C2 394 aaKnown RBP13.53□□□□□ -0.24
USP47-202ENST00000339865 TAS2R42Q7RTR8 314 aa13.53□□□□□ -0.24
USP47-202ENST00000339865 RHOT2Q8IXI1 618 aa13.53□□□□□ -0.24
USP47-202ENST00000339865 LPIN2Q92539 896 aa13.53□□□□□ -0.24
USP47-202ENST00000339865 LRRC39Q96DD0 335 aa13.53□□□□□ -0.24
USP47-202ENST00000339865 CHAMP1Q96JM3 812 aa13.53□□□□□ -0.24
USP47-202ENST00000339865 NACC1Q96RE7 527 aa13.53□□□□□ -0.24
USP47-202ENST00000339865 TSSK1BQ9BXA7 367 aa13.53□□□□□ -0.24
USP47-202ENST00000339865 VAMP4O75379 141 aa13.53□□□□□ -0.24
USP47-202ENST00000339865 NCAPHQ15003 741 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms