RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 VASPP50552 380 aaPredicted RBP4.51□□□□□ -1.69
MCF2-201ENST00000338585 VAMP7P51809 220 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 POLR2FP61218 127 aaKnown RBP4.51□□□□□ -1.69
MCF2-201ENST00000338585 ZBED6P86452 979 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 STRN3Q13033 797 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 MYBPC2Q14324 1141 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 GRIK4Q16099 956 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 KIAA0753Q2KHM9 967 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 SEZ6Q53EL9 994 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 FIGNQ5HY92 759 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 CDCA2Q69YH5 1023 aaPredicted RBP4.51□□□□□ -1.69
MCF2-201ENST00000338585 MTHFD1LQ6UB35 978 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 RRAGAQ7L523 313 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 LINC01465Q8N7H1 131 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 RETREG2Q8NC44 543 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 NEK11Q8NG66 645 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 CD99L2Q8TCZ2 262 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 LMBR1Q8WVP7 490 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 TCP11Q8WWU5 503 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 CCDC127Q96BQ5 260 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 CCDC51Q96ER9 411 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 C16orf45Q96MC5 204 aaPredicted RBP4.51□□□□□ -1.69
MCF2-201ENST00000338585 POP1Q99575 1024 aaKnown RBP4.51□□□□□ -1.69
MCF2-201ENST00000338585 FAM213AQ9BRX8 229 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 NUP58Q9BVL2 599 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 GANQ9H2C0 597 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 SIX2Q9NPC8 291 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 TOPORSQ9NS56 1045 aaPredicted RBP4.51□□□□□ -1.69
MCF2-201ENST00000338585 GCNT4Q9P109 453 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 CGNQ9P2M7 1197 aaKnown RBP4.51□□□□□ -1.69
MCF2-201ENST00000338585 PPME1Q9Y570 386 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 PHLPP2Q6ZVD8 1323 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 A0A087WZ62 844 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 A0A1W2PQJ5 194 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 H0YCG3 227 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 INO80B-WBP1J3KQ70 363 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 NRDCO43847 1150 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 GAS2O43903 313 aaKnown RBP4.51□□□□□ -1.69
MCF2-201ENST00000338585 PGK1P00558 417 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 PIGRP01833 764 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 SMIM10L2AP0DMW4 78 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 SMIM10L2BP0DMW5 78 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 KRT13P13646 458 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 ACOT2P49753 483 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 NLRP11P59045 1033 aaKnown RBP4.51□□□□□ -1.69
MCF2-201ENST00000338585 ZNF200P98182 395 aaPredicted RBP4.51□□□□□ -1.69
MCF2-201ENST00000338585 PPP2R3AQ06190 1150 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 CACNB2Q08289 660 aaPredicted RBP4.51□□□□□ -1.69
MCF2-201ENST00000338585 MXD4Q14582 209 aaPredicted RBP4.51□□□□□ -1.69
MCF2-201ENST00000338585 MFSD10Q14728 455 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 EXOC3L4Q17RC7 722 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 CDR2LQ86X02 465 aaPredicted RBP4.51□□□□□ -1.69
MCF2-201ENST00000338585 ACRBPQ8NEB7 543 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 TMEM174Q8WUU8 243 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 ELMO3Q96BJ8 720 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 PPP1R13BQ96KQ4 1090 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 FDXACB1Q9BRP7 624 aaPredicted RBP4.51□□□□□ -1.69
MCF2-201ENST00000338585 INO80BQ9C086 356 aaPredicted RBP4.51□□□□□ -1.69
MCF2-201ENST00000338585 FAM49AQ9H0Q0 323 aaPredicted RBP4.51□□□□□ -1.69
MCF2-201ENST00000338585 AP5M1Q9H0R1 490 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 TMEM134Q9H6X4 195 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.51□□□□□ -1.69
MCF2-201ENST00000338585 AKT3Q9Y243 479 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 FHOD1Q9Y613 1164 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 STYXL1Q9Y6J8 313 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 A0A0B4J269 797 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 LRRIQ3A6PVS8 624 aaPredicted RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 ABLIM1O14639 778 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 PRKCBP05771 671 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 C6orf222P0C671 652 aaPredicted RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 PNMA6AP0CW24 399 aaPredicted RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 AKR1A1P14550 325 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 GARTP22102 1010 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 CCND3P30281 292 aaPredicted RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 TNFSF9P41273 254 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 KCNJ6P48051 423 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 PSEN2P49810 448 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 SNRPFP62306 86 aaKnown RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 MYL7Q01449 175 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 MBTD1Q05BQ5 628 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 TMEM62Q0P6H9 643 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 IRF5Q13568 498 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 MEA1Q16626 185 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 FSCN1Q16658 493 aaKnown RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 KLHDC7AQ5VTJ3 777 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 MFSD14CQ5VZR4 134 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 EEF1DP3Q658K8 133 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 LMBRD2Q68DH5 695 aaPredicted RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 PDXDC1Q6P996 788 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 TRIM65Q6PJ69 517 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 CRELD2Q6UXH1 353 aaPredicted RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 GBP6Q6ZN66 633 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 RUFY4Q6ZNE9 571 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 INTS8Q75QN2 995 aaKnown RBP4.5□□□□□ -1.69
MCF2-201ENST00000338585 CACNA2D4Q7Z3S7 1137 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 ZBTB33Q86T24 672 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 KIAA0319LQ8IZA0 1049 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 GPD1LQ8N335 351 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 PARD3BQ8TEW8 1205 aa4.5□□□□□ -1.69
MCF2-201ENST00000338585 KCNN1Q92952 543 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms