RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 TBC1D10CQ8IV04 446 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 TMEM47Q9BQJ4 181 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 BSDC1Q9NW68 430 aaPredicted RBP13.39□□□□□ -0.27
SDC3-201ENST00000336798 ARIH2O95376 493 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 FAM161BQ96MY7 647 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 CAPN10Q9HC96 672 aa13.39□□□□□ -0.27
SDC3-201ENST00000336798 ATP10AO60312 1499 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 GOLGA8RI6L899 631 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 OCA2Q04671 838 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 MKRN4PQ13434 485 aaPredicted RBP13.38□□□□□ -0.27
SDC3-201ENST00000336798 SPDYAQ5MJ70 313 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 ALS2CLQ60I27 953 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 INTS2Q9H0H0 1204 aaKnown RBP13.38□□□□□ -0.27
SDC3-201ENST00000336798 MEFVO15553 781 aaPredicted RBP13.38□□□□□ -0.27
SDC3-201ENST00000336798 MYO1DO94832 1006 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 LMNAP02545 664 aaKnown RBP13.38□□□□□ -0.27
SDC3-201ENST00000336798 PRCPP42785 496 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 PPP3CCP48454 512 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 DYNC1I2Q13409 638 aaKnown RBP13.38□□□□□ -0.27
SDC3-201ENST00000336798 KCTD17Q8N5Z5 321 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 ASPSCR1Q9BZE9 553 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 UNC45AQ9H3U1 944 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 AURKCQ9UQB9 309 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 KIZQ2M2Z5 673 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 CEP95Q96GE4 821 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 FAM167BQ9BTA0 163 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 KIFC3Q9BVG8 833 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 MAGEB5Q9BZ81 275 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 GGT7Q9UJ14 662 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 ARAP3Q8WWN8 1544 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 FTLP02792 175 aaPredicted RBP13.38□□□□□ -0.27
SDC3-201ENST00000336798 TRIM49P0CI25 452 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 TRIM49CP0CI26 452 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 NUMBP49757 651 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 PMS2P54278 862 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 UNC13DQ70J99 1090 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 SLC9A2Q9UBY0 812 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 INSRP06213 1382 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 MAN1A2O60476 641 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 CALB1P05937 261 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 CUL1Q13616 776 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 NAALADL2Q58DX5 795 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 PPP4R3CPQ6ZMV5 832 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 NUP93Q8N1F7 819 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 TRIM45Q9H8W5 580 aaPredicted RBP13.38□□□□□ -0.27
SDC3-201ENST00000336798 SCAF8Q9UPN6 1271 aaKnown RBP13.38□□□□□ -0.27
SDC3-201ENST00000336798 ERBB4Q15303 1308 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 PALLDQ8WX93 1383 aa13.38□□□□□ -0.27
SDC3-201ENST00000336798 PTPRTO14522 1441 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 HNRNPCP07910 306 aaKnown RBP eCLIP13.37□□□□□ -0.27
SDC3-201ENST00000336798 SULT1E1P49888 294 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 EIF3BP55884 814 aaKnown RBP13.37□□□□□ -0.27
SDC3-201ENST00000336798 SYTL3Q4VX76 610 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 MFSD14CQ5VZR4 134 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 NSUN6Q8TEA1 469 aaKnown RBP13.37□□□□□ -0.27
SDC3-201ENST00000336798 PANX2Q96RD6 677 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 TMEM60Q9H2L4 133 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 TJP2Q9UDY2 1190 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 STAP2Q9UGK3 403 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 DOLKQ9UPQ8 538 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 PIN4Q9Y237 131 aaKnown RBP13.37□□□□□ -0.27
SDC3-201ENST00000336798 ARL4DP49703 201 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 TFDP2Q14188 446 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 AARS2Q5JTZ9 985 aaKnown RBP13.37□□□□□ -0.27
SDC3-201ENST00000336798 PID1Q7Z2X4 250 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 C11orf96Q7Z7L8 435 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 RAET1EQ8TD07 263 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 FAM167AQ96KS9 214 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 CEP72Q9P209 647 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 HDAC6Q9UBN7 1215 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 KRT14P02533 472 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 FCER1AP12319 257 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 CENPAP49450 140 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 DRAP1Q14919 205 aaPredicted RBP13.37□□□□□ -0.27
SDC3-201ENST00000336798 GIMAP8Q8ND71 665 aaPredicted RBP13.37□□□□□ -0.27
SDC3-201ENST00000336798 GCOM2Q9BZD3 368 aaPredicted RBP13.37□□□□□ -0.27
SDC3-201ENST00000336798 ZNF711Q9Y462 761 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 PODXLO00592 558 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 RGS7P49802 495 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 HIF1AQ16665 826 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 SMIM5Q71RC9 77 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 DCUN1D1Q96GG9 259 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 LXNQ9BS40 222 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 ELP3Q9H9T3 547 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 SYTL2Q9HCH5 934 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 CYP26B1Q9NR63 512 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 GEMIN8Q9NWZ8 242 aaKnown RBP13.37□□□□□ -0.27
SDC3-201ENST00000336798 STAP1Q9ULZ2 295 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 TRIM33Q9UPN9 1127 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 RNF123Q5XPI4 1314 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 TMEM2Q9UHN6 1383 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 GGCXP38435 758 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 CDH6P55285 790 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 PATL1Q86TB9 770 aaKnown RBP13.37□□□□□ -0.27
SDC3-201ENST00000336798 ADGRF4Q8IZF3 695 aa13.37□□□□□ -0.27
SDC3-201ENST00000336798 KDM5AP29375 1690 aaKnown RBP13.37□□□□□ -0.27
SDC3-201ENST00000336798 ARHGAP10A1A4S6 786 aa13.36□□□□□ -0.27
SDC3-201ENST00000336798 CUL3Q13618 768 aa13.36□□□□□ -0.27
SDC3-201ENST00000336798 RESP18Q5W5W9 173 aa13.36□□□□□ -0.27
SDC3-201ENST00000336798 MCPH1Q8NEM0 835 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms