RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 TAS1R3Q7RTX0 852 aa17.45■□□□□ 0.38
CLN3-201ENST00000333496 KRI1Q8N9T8 703 aaKnown RBP17.45■□□□□ 0.38
CLN3-201ENST00000333496 NXF3Q9H4D5 531 aaKnown RBP17.45■□□□□ 0.38
CLN3-201ENST00000333496 PDZD7Q9H5P4 517 aa17.45■□□□□ 0.38
CLN3-201ENST00000333496 NRDE2Q9H7Z3 1164 aa17.45■□□□□ 0.38
CLN3-201ENST00000333496 C17orf75Q9HAS0 396 aa17.45■□□□□ 0.38
CLN3-201ENST00000333496 ARHGAP28Q9P2N2 729 aa17.45■□□□□ 0.38
CLN3-201ENST00000333496 B4GALT3O60512 393 aa17.44■□□□□ 0.38
CLN3-201ENST00000333496 CSPG5O95196 566 aa17.44■□□□□ 0.38
CLN3-201ENST00000333496 ITGA4P13612 1032 aa17.44■□□□□ 0.38
CLN3-201ENST00000333496 IRS1P35568 1242 aa17.44■□□□□ 0.38
CLN3-201ENST00000333496 EFNA5P52803 228 aa17.44■□□□□ 0.38
CLN3-201ENST00000333496 DMP1Q13316 513 aaPredicted RBP17.44■□□□□ 0.38
CLN3-201ENST00000333496 STK38Q15208 465 aa17.44■□□□□ 0.38
CLN3-201ENST00000333496 TIGD5Q53EQ6 642 aa17.44■□□□□ 0.38
CLN3-201ENST00000333496 TCEAL5Q5H9L2 206 aa17.44■□□□□ 0.38
CLN3-201ENST00000333496 NT5DC1Q5TFE4 455 aa17.44■□□□□ 0.38
CLN3-201ENST00000333496 THNSL1Q8IYQ7 743 aa17.44■□□□□ 0.38
CLN3-201ENST00000333496 RASSF8Q8NHQ8 419 aa17.44■□□□□ 0.38
CLN3-201ENST00000333496 RSPH1Q8WYR4 309 aa17.44■□□□□ 0.38
CLN3-201ENST00000333496 LARP4BQ92615 738 aaKnown RBP17.44■□□□□ 0.38
CLN3-201ENST00000333496 ZNF396Q96N95 335 aaPredicted RBP17.44■□□□□ 0.38
CLN3-201ENST00000333496 ZNF558Q96NG5 402 aa17.44■□□□□ 0.38
CLN3-201ENST00000333496 NTPCRQ9BSD7 190 aaKnown RBP17.44■□□□□ 0.38
CLN3-201ENST00000333496 NSUN3Q9H649 340 aaKnown RBP17.44■□□□□ 0.38
CLN3-201ENST00000333496 MIOSQ9NXC5 875 aa17.44■□□□□ 0.38
CLN3-201ENST00000333496 THEGQ9P2T0 379 aa17.44■□□□□ 0.38
CLN3-201ENST00000333496 DAXXQ9UER7 740 aaPredicted RBP17.44■□□□□ 0.38
CLN3-201ENST00000333496 NT5C1B-RDH14C9J2C7 533 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 K7ERI5 159 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 SPTLC2O15270 562 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 DDHD2O94830 711 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 DDIT3P35638 169 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 BCAR1P56945 870 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 PLCB3Q01970 1234 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 EEF1DP3Q658K8 133 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 GPBP1Q86WP2 473 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 ZNF280BQ86YH2 543 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 REEP2Q9BRK0 252 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 APOL6Q9BWW8 343 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 TRIM6Q9C030 488 aaPredicted RBP17.43■□□□□ 0.38
CLN3-201ENST00000333496 TMEM134Q9H6X4 195 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 KMT5AQ9NQR1 393 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 DNAJB4Q9UDY4 337 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 ZDHHC9Q9Y397 364 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 CITO14578 2027 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 C5orf42Q9H799 3197 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 A0A087X0B3 334 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 ARL5CA6NH57 179 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 N4BP3O15049 544 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 INPPL1O15357 1258 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 SLC16A4O15374 487 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 PPP6R2O75170 966 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 YEATS4O95619 227 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 PLS3P13797 630 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 AKAP5P24588 427 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 TFF2Q03403 129 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 UBE3AQ05086 875 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 CSPP1Q1MSJ5 1256 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 TMEM173Q86WV6 379 aaPredicted RBP17.43■□□□□ 0.38
CLN3-201ENST00000333496 SLC39A11Q8N1S5 342 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 ZFP42Q96MM3 310 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 GAD1Q99259 594 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 UBN1Q9NPG3 1134 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 PCDHGC5Q9Y5F6 944 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 PHLPP2Q6ZVD8 1323 aa17.43■□□□□ 0.38
CLN3-201ENST00000333496 MUC3AQ02505 3323 aa17.42■□□□□ 0.38
CLN3-201ENST00000333496 ZC3H11AO75152 810 aaKnown RBP eCLIP17.42■□□□□ 0.38
CLN3-201ENST00000333496 POMCP01189 267 aa17.42■□□□□ 0.38
CLN3-201ENST00000333496 MLH1P40692 756 aa17.42■□□□□ 0.38
CLN3-201ENST00000333496 ERVFC1P60507 584 aa17.42■□□□□ 0.38
CLN3-201ENST00000333496 GIT2Q14161 759 aa17.42■□□□□ 0.38
CLN3-201ENST00000333496 TMEM161BQ8NDZ6 487 aa17.42■□□□□ 0.38
CLN3-201ENST00000333496 GSTCDQ8NEC7 633 aa17.42■□□□□ 0.38
CLN3-201ENST00000333496 SPIRE2Q8WWL2 714 aa17.42■□□□□ 0.38
CLN3-201ENST00000333496 MRPS27Q92552 414 aaKnown RBP17.42■□□□□ 0.38
CLN3-201ENST00000333496 SPG21Q9NZD8 308 aa17.42■□□□□ 0.38
CLN3-201ENST00000333496 CCDC39Q9UFE4 941 aa17.42■□□□□ 0.38
CLN3-201ENST00000333496 ODF2LQ9ULJ1 636 aa17.42■□□□□ 0.38
CLN3-201ENST00000333496 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.41■□□□□ 0.38
CLN3-201ENST00000333496 BRD1O95696 1058 aa17.41■□□□□ 0.38
CLN3-201ENST00000333496 GALTP07902 379 aa17.41■□□□□ 0.38
CLN3-201ENST00000333496 ALDH7A1P49419 539 aaKnown RBP17.41■□□□□ 0.38
CLN3-201ENST00000333496 ZNF131P52739 623 aa17.41■□□□□ 0.38
CLN3-201ENST00000333496 RNASELQ05823 741 aaKnown RBP17.41■□□□□ 0.38
CLN3-201ENST00000333496 ADGRD2Q7Z7M1 963 aa17.41■□□□□ 0.38
CLN3-201ENST00000333496 URGCPQ8TCY9 931 aa17.41■□□□□ 0.38
CLN3-201ENST00000333496 ATXN2LQ8WWM7 1075 aaKnown RBP17.41■□□□□ 0.38
CLN3-201ENST00000333496 HLA-CQ95604 372 aa17.41■□□□□ 0.38
CLN3-201ENST00000333496 ACO2Q99798 780 aaKnown RBP17.41■□□□□ 0.38
CLN3-201ENST00000333496 PANK2Q9BZ23 570 aa17.41■□□□□ 0.38
CLN3-201ENST00000333496 GBP3Q9H0R5 595 aa17.41■□□□□ 0.38
CLN3-201ENST00000333496 TLR9Q9NR96 1032 aa17.41■□□□□ 0.38
CLN3-201ENST00000333496 KANSL3Q9P2N6 904 aa17.41■□□□□ 0.38
CLN3-201ENST00000333496 STK17AQ9UEE5 414 aa17.41■□□□□ 0.38
CLN3-201ENST00000333496 LZTS1Q9Y250 596 aa17.41■□□□□ 0.38
CLN3-201ENST00000333496 GIT1Q9Y2X7 761 aa17.41■□□□□ 0.38
CLN3-201ENST00000333496 GTF2F1P35269 517 aaKnown RBP eCLIP17.4■□□□□ 0.38
CLN3-201ENST00000333496 PPM1AP35813 382 aa17.4■□□□□ 0.38
CLN3-201ENST00000333496 SLC11A1P49279 550 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms