RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 C1orf228Q6PIY5 440 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 EYA1Q99502 592 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 SPATA2Q9UM82 520 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 GRID2IPA4D2P6 1211 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 E5RI56 91 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 POLR2MP0CAP2 368 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 GYG1P46976 350 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 PDP2Q9P2J9 529 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 NCKAP5LQ9HCH0 1330 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 STRNO43815 780 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 ARIH2O95376 493 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 CDC27P30260 824 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 SCNN1DP51172 638 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 IDI1Q13907 227 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 CDC37Q16543 378 aaPredicted RBP9.23□□□□□ -0.93
USF3-201ENST00000316407 ZNF710Q8N1W2 664 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 TMEM161AQ9NX61 479 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 ZFATQ9P243 1243 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 HAO1Q9UJM8 370 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 KRT16P08779 473 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 LAMC2Q13753 1193 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 PATL1Q86TB9 770 aaKnown RBP9.23□□□□□ -0.93
USF3-201ENST00000316407 ATP11CQ8NB49 1132 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 DCUN1D5Q9BTE7 237 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 GGA1Q9UJY5 639 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 ABCC4O15439 1325 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 MED7O43513 233 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 MFN2O95140 757 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 PYGMP11217 842 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 VHLP40337 213 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 ROR1Q01973 937 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 BRDTQ58F21 947 aaPredicted RBP9.23□□□□□ -0.93
USF3-201ENST00000316407 RASGRP2Q7LDG7 609 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 MICU2Q8IYU8 434 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 MRPS26Q9BYN8 205 aaKnown RBP9.23□□□□□ -0.93
USF3-201ENST00000316407 PCSK1NQ9UHG2 260 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 MROH5Q6ZUA9 1318 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 LRRC31Q6UY01 552 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 CPSF3Q9UKF6 684 aaKnown RBP9.23□□□□□ -0.93
USF3-201ENST00000316407 TYW5A2RUC4 315 aaKnown RBP9.23□□□□□ -0.93
USF3-201ENST00000316407 TPST1O60507 370 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 PDAP1Q13442 181 aaKnown RBP9.23□□□□□ -0.93
USF3-201ENST00000316407 C6orf10Q5SRN2 563 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 DDI2Q5TDH0 399 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 LAYNQ6UX15 382 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 TTC8Q8TAM2 541 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 C17orf80Q9BSJ5 609 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 ZNF408Q9H9D4 720 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 EMILIN3Q9NT22 766 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 SPDYAQ5MJ70 313 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 ZMYM3Q14202 1370 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 TTC26A0AVF1 554 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 FAM200BP0CF97 657 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 KCNA2P16389 499 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 PRCPP42785 496 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 OVGP1Q12889 678 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 PTGISQ16647 500 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 ZNF564Q8TBZ8 553 aaPredicted RBP9.23□□□□□ -0.93
USF3-201ENST00000316407 HERC5Q9UII4 1024 aaKnown RBP9.23□□□□□ -0.93
USF3-201ENST00000316407 IQCA1LA6NCM1 817 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 LGALS16A8MUM7 142 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 GSNP06396 782 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 CTSWP56202 376 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 NOA1Q8NC60 698 aaKnown RBP9.23□□□□□ -0.93
USF3-201ENST00000316407 BHMT2Q9H2M3 363 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 MAST1Q9Y2H9 1570 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 CITO14578 2027 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 NEURL1BA8MQ27 555 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 KRT33BQ14525 404 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 FGD2Q7Z6J4 655 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 ARHGEF1Q92888 912 aaKnown RBP9.23□□□□□ -0.93
USF3-201ENST00000316407 RBM17Q96I25 401 aaKnown RBP9.23□□□□□ -0.93
USF3-201ENST00000316407 ZNF577Q9BSK1 485 aa9.23□□□□□ -0.93
USF3-201ENST00000316407 WWP1Q9H0M0 922 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 C14orf93Q9H972 538 aaKnown RBP9.22□□□□□ -0.93
USF3-201ENST00000316407 IZUMO3Q5VZ72 239 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 ACCSQ96QU6 501 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 KLF6Q99612 283 aaPredicted RBP9.22□□□□□ -0.93
USF3-201ENST00000316407 VCPKMTQ9H867 229 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 RNF123Q5XPI4 1314 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 CHRNA3P32297 505 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 BFSP2Q13515 415 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 KLHL31Q9H511 634 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 BLOC1S6Q9UL45 172 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 YTHDC2Q9H6S0 1430 aaKnown RBP9.22□□□□□ -0.93
USF3-201ENST00000316407 C1orf232A0A0U1RR37 186 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 ZBED4O75132 1171 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 RHOT2Q8IXI1 618 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 PNKPQ96T60 521 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 EGFL8Q99944 293 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 C6orf62Q9GZU0 229 aaPredicted RBP9.22□□□□□ -0.93
USF3-201ENST00000316407 B2RBV5 119 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 PRPF4O43172 522 aaKnown RBP eCLIP9.22□□□□□ -0.93
USF3-201ENST00000316407 EFCAB14O75071 495 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 C16orf72Q14CZ0 275 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 CCSER1Q9C0I3 900 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 MID2Q9UJV3 735 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 SRPRBQ9Y5M8 271 aaKnown RBP9.22□□□□□ -0.93
USF3-201ENST00000316407 PIPSLA2A3N6 862 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 KRT87PA6NCN2 255 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms