RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 COBLL1Q53SF7 1204 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 CC2D1AQ6P1N0 951 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-201ENST00000302528 FKBP9P1Q75LS8 142 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 KRT78Q8N1N4 520 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-201ENST00000302528 BEST2Q8NFU1 509 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 FOPNLQ96NB1 174 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 GINS4Q9BRT9 223 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 UNC45AQ9H3U1 944 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 SAMSN1Q9NSI8 373 aaKnown RBP10.99□□□□□ -0.65
CLIP1-201ENST00000302528 TBC1D23Q9NUY8 699 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 USP21Q9UK80 565 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 DNAJC12Q9UKB3 198 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 SESN1Q9Y6P5 492 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 PPEF1O14829 653 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-201ENST00000302528 CLDN3O15551 220 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 BRAFP15056 766 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 HOXA7P31268 230 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-201ENST00000302528 PMS2P54278 862 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 CC2D2BQ6DHV5 1058 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 KRT77Q7Z794 578 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 CDKL3Q8IVW4 592 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-201ENST00000302528 RNF25Q96BH1 459 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-201ENST00000302528 PCSK1NQ9UHG2 260 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 M0QYV0 167 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 NFIBO00712 420 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 PALMO75781 387 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 NUP62P37198 522 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-201ENST00000302528 LRRC63Q05C16 580 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 ACTN3Q08043 901 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-201ENST00000302528 PDIA2Q13087 525 aaKnown RBP10.99□□□□□ -0.65
CLIP1-201ENST00000302528 ANKRD40Q6AI12 368 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 C16orf62Q7Z3J2 963 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 SH3TC2Q8TF17 1288 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 ZNF496Q96IT1 587 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-201ENST00000302528 TSSK1BQ9BXA7 367 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 NSMCE4AQ9NXX6 385 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 PSD3Q9NYI0 1048 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 PAIP2BQ9ULR5 123 aaKnown RBP10.99□□□□□ -0.65
CLIP1-201ENST00000302528 DTNAQ9Y4J8 743 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 ABCC1P33527 1531 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 SSH2Q76I76 1423 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 ANKRD65E5RJM6 399 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 PLCG1P19174 1290 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 ROR1Q01973 937 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 ARHGAP17Q68EM7 881 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 CAPRIN2Q6IMN6 1127 aaKnown RBP10.99□□□□□ -0.65
CLIP1-201ENST00000302528 AKAP10O43572 662 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 PPP3CCP48454 512 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 UBE3CQ15386 1083 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 TRIP4Q15650 581 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-201ENST00000302528 BRIP1Q9BX63 1249 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 RASSF9O75901 435 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 IREB2P48200 963 aaKnown RBP10.98□□□□□ -0.65
CLIP1-201ENST00000302528 SERPINB4P48594 390 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 TMED10P49755 219 aaKnown RBP10.98□□□□□ -0.65
CLIP1-201ENST00000302528 CLK1P49759 484 aaKnown RBP10.98□□□□□ -0.65
CLIP1-201ENST00000302528 NCALDP61601 193 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 GPC5P78333 572 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 HPCAP84074 193 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 TMEM270Q6UE05 265 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 ZBED8Q8IZ13 594 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 BBS2Q9BXC9 721 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 CDC25AP30304 524 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 GPS1Q13098 491 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 TP53BP2Q13625 1128 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 UBE2SQ16763 222 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 C11orf57Q6ZUT1 292 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-201ENST00000302528 PODNQ7Z5L7 613 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 DDX53Q86TM3 631 aaKnown RBP10.98□□□□□ -0.65
CLIP1-201ENST00000302528 ASZ1Q8WWH4 475 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 ATXN7L3BQ96GX2 97 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 PPP1R36Q96LQ0 422 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 PANX2Q96RD6 677 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 C11orf70Q9BRQ4 267 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.98□□□□□ -0.65
CLIP1-201ENST00000302528 SIK2Q9H0K1 926 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 POLR3EQ9NVU0 708 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 XDHP47989 1333 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 M0R3G1 203 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 IYDQ6PHW0 289 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 SARM1Q6SZW1 724 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 CYGBQ8WWM9 190 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 PRPF18Q99633 342 aaKnown RBP10.98□□□□□ -0.65
CLIP1-201ENST00000302528 ARHGEF3Q9NR81 526 aa10.98□□□□□ -0.65
CLIP1-201ENST00000302528 GMNCA6NCL1 334 aa10.97□□□□□ -0.65
CLIP1-201ENST00000302528 DFFAO00273 331 aa10.97□□□□□ -0.65
CLIP1-201ENST00000302528 C4BPBP20851 252 aa10.97□□□□□ -0.65
CLIP1-201ENST00000302528 SERPINB1P30740 379 aa10.97□□□□□ -0.65
CLIP1-201ENST00000302528 PHKA2P46019 1235 aa10.97□□□□□ -0.65
CLIP1-201ENST00000302528 GPC3P51654 580 aa10.97□□□□□ -0.65
CLIP1-201ENST00000302528 BCAR1P56945 870 aa10.97□□□□□ -0.65
CLIP1-201ENST00000302528 TRADDQ15628 312 aa10.97□□□□□ -0.65
CLIP1-201ENST00000302528 MAPK6Q16659 721 aa10.97□□□□□ -0.65
CLIP1-201ENST00000302528 KIZQ2M2Z5 673 aa10.97□□□□□ -0.65
CLIP1-201ENST00000302528 ZNF568Q3ZCX4 644 aa10.97□□□□□ -0.65
CLIP1-201ENST00000302528 ZBTB38Q8NAP3 1195 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-201ENST00000302528 WWP1Q9H0M0 922 aa10.97□□□□□ -0.65
CLIP1-201ENST00000302528 RPAP3Q9H6T3 665 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-201ENST00000302528 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms