RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 HSPA4LO95757 839 aa5.12□□□□□ -1.59
CSMD3-201ENST00000297405 GNAT1P11488 350 aa5.12□□□□□ -1.59
CSMD3-201ENST00000297405 HADHAP40939 763 aa5.12□□□□□ -1.59
CSMD3-201ENST00000297405 RAB2AP61019 212 aa5.12□□□□□ -1.59
CSMD3-201ENST00000297405 ENPEPQ07075 957 aa5.12□□□□□ -1.59
CSMD3-201ENST00000297405 PDE4DQ08499 809 aa5.12□□□□□ -1.59
CSMD3-201ENST00000297405 MAN2A1Q16706 1144 aa5.12□□□□□ -1.59
CSMD3-201ENST00000297405 WASHC2DQ5SRD0 308 aa5.12□□□□□ -1.59
CSMD3-201ENST00000297405 PMF1Q6P1K2 205 aa5.12□□□□□ -1.59
CSMD3-201ENST00000297405 BBS7Q8IWZ6 715 aa5.12□□□□□ -1.59
CSMD3-201ENST00000297405 FOXP1Q9H334 677 aaPredicted RBP5.12□□□□□ -1.59
CSMD3-201ENST00000297405 PIH1D3Q9NQM4 214 aaKnown RBP5.12□□□□□ -1.59
CSMD3-201ENST00000297405 TYW5A2RUC4 315 aaKnown RBP5.12□□□□□ -1.59
CSMD3-201ENST00000297405 TMPRSS15P98073 1019 aa5.12□□□□□ -1.59
CSMD3-201ENST00000297405 ARL6IP4Q66PJ3 421 aaKnown RBP5.12□□□□□ -1.59
CSMD3-201ENST00000297405 ELMSAN1Q6PJG2 1045 aa5.12□□□□□ -1.59
CSMD3-201ENST00000297405 ZNF589Q86UQ0 364 aaPredicted RBP5.12□□□□□ -1.59
CSMD3-201ENST00000297405 SPICE1Q8N0Z3 855 aa5.12□□□□□ -1.59
CSMD3-201ENST00000297405 AGBL1Q96MI9 1066 aa5.12□□□□□ -1.59
CSMD3-201ENST00000297405 TSPAN18Q96SJ8 248 aa5.12□□□□□ -1.59
CSMD3-201ENST00000297405 TEX13BQ9BXU2 312 aa5.12□□□□□ -1.59
CSMD3-201ENST00000297405 NOD2Q9HC29 1040 aa5.12□□□□□ -1.59
CSMD3-201ENST00000297405 ARHGEF3Q9NR81 526 aa5.12□□□□□ -1.59
CSMD3-201ENST00000297405 SNX14Q9Y5W7 946 aa5.12□□□□□ -1.59
CSMD3-201ENST00000297405 TTC33Q6PID6 262 aaPredicted RBP5.12□□□□□ -1.59
CSMD3-201ENST00000297405 REXO1Q8N1G1 1221 aaKnown RBP5.12□□□□□ -1.59
CSMD3-201ENST00000297405 PDPRQ8NCN5 879 aa5.12□□□□□ -1.59
CSMD3-201ENST00000297405 GIMAP8Q8ND71 665 aaPredicted RBP5.12□□□□□ -1.59
CSMD3-201ENST00000297405 BDH2Q9BUT1 245 aa5.12□□□□□ -1.59
CSMD3-201ENST00000297405 ANP32DO95626 131 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 RPL22P35268 128 aaKnown RBP5.11□□□□□ -1.59
CSMD3-201ENST00000297405 GGCXP38435 758 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 PTK2Q05397 1052 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 MYOCDQ8IZQ8 938 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 MYL10Q9BUA6 226 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 KIFC1Q9BW19 673 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 TMEM63CQ9P1W3 806 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 MED7O43513 233 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 RCVRNP35243 200 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 QARSP47897 775 aaKnown RBP5.11□□□□□ -1.59
CSMD3-201ENST00000297405 CALCRLQ16602 461 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 SYCE2Q6PIF2 218 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 ZNF579Q8NAF0 562 aaKnown RBP5.11□□□□□ -1.59
CSMD3-201ENST00000297405 STARD13Q9Y3M8 1113 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 TMEM110-MUSTN1A8MSY1 372 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 PARNO95453 639 aaKnown RBP5.11□□□□□ -1.59
CSMD3-201ENST00000297405 SCRN1Q12765 414 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 SETD9Q8NE22 299 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 LENG1Q96BZ8 264 aaPredicted RBP5.11□□□□□ -1.59
CSMD3-201ENST00000297405 PLEKHA4Q9H4M7 779 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 RXFP1Q9HBX9 757 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 CABP5Q9NP86 173 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 RHBDL2Q9NX52 303 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 TROQ12816 1431 aaPredicted RBP5.11□□□□□ -1.59
CSMD3-201ENST00000297405 PEX1O43933 1283 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 CCT3P49368 545 aaKnown RBP5.11□□□□□ -1.59
CSMD3-201ENST00000297405 DGUOKQ16854 277 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 GATAD2AQ86YP4 633 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 EFHBQ8N7U6 833 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 RABL2AQ9UBK7 228 aaPredicted RBP5.11□□□□□ -1.59
CSMD3-201ENST00000297405 FAM153AQ9UHL3 310 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 RABL2BQ9UNT1 228 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 CHMLP26374 656 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 IFNAR2P48551 515 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 HIRAP54198 1017 aaPredicted RBP5.11□□□□□ -1.59
CSMD3-201ENST00000297405 NAA20P61599 178 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 DDR1Q08345 913 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 WASHC5Q12768 1159 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 TRIP4Q15650 581 aaPredicted RBP5.11□□□□□ -1.59
CSMD3-201ENST00000297405 RAPH1Q70E73 1250 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 ELOA2Q8IYF1 753 aaPredicted RBP5.11□□□□□ -1.59
CSMD3-201ENST00000297405 KCTD17Q8N5Z5 321 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 SCAIQ8N9R8 606 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 MDM1Q8TC05 714 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 FNIP1Q8TF40 1166 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 STOX2Q9P2F5 926 aaPredicted RBP5.11□□□□□ -1.59
CSMD3-201ENST00000297405 AMACRQ9UHK6 382 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 COL4A3BPQ9Y5P4 624 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 SNX9Q9Y5X1 595 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 F8VZ95 297 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 SYNCRIPO60506 623 aaKnown RBP5.11□□□□□ -1.59
CSMD3-201ENST00000297405 IFNA16P05015 189 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 GHRP10912 638 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 HNRNPH1P31943 449 aaKnown RBP5.11□□□□□ -1.59
CSMD3-201ENST00000297405 ARFIP2P53365 341 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 C21orf59P57076 290 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 C2CD6Q53TS8 623 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 LVRNQ6Q4G3 990 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 PALB2Q86YC2 1186 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 PLEKHM2Q8IWE5 1019 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 DPF3Q92784 378 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 GORASP1Q9BQQ3 440 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 FICDQ9BVA6 458 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 VWA3AA6NCI4 1184 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 ARHGEF33A8MVX0 844 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 POTECB2RU33 542 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 CNOT3O75175 753 aaKnown RBP5.11□□□□□ -1.59
CSMD3-201ENST00000297405 SEMA3DO95025 777 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 C1orf228Q6PIY5 440 aa5.11□□□□□ -1.59
CSMD3-201ENST00000297405 ERICH1Q86X53 443 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms