RNA–Protein interactions for RNA: ENST00000296215.7

SNIP1-201, Transcript of Smad nuclear interacting protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNIP1, Length 4,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-201ENST00000296215 PDK3Q15120 406 aa12.44□□□□□ -0.42
SNIP1-201ENST00000296215 EAPPQ56P03 285 aaPredicted RBP12.44□□□□□ -0.42
SNIP1-201ENST00000296215 CCDC28AQ8IWP9 274 aa12.44□□□□□ -0.42
SNIP1-201ENST00000296215 SPERTQ8NA61 448 aa12.44□□□□□ -0.42
SNIP1-201ENST00000296215 PYROXD1Q8WU10 500 aa12.44□□□□□ -0.42
SNIP1-201ENST00000296215 CALML4Q96GE6 196 aa12.44□□□□□ -0.42
SNIP1-201ENST00000296215 TBC1D10AQ9BXI6 508 aa12.44□□□□□ -0.42
SNIP1-201ENST00000296215 PUS3Q9BZE2 481 aaKnown RBP12.44□□□□□ -0.42
SNIP1-201ENST00000296215 CSRNP2Q9H175 543 aa12.44□□□□□ -0.42
SNIP1-201ENST00000296215 SLC38A10Q9HBR0 1119 aa12.44□□□□□ -0.42
SNIP1-201ENST00000296215 WDR6Q9NNW5 1121 aaKnown RBP12.44□□□□□ -0.42
SNIP1-201ENST00000296215 EXOC1LA0A1B0GW35 172 aa12.44□□□□□ -0.42
SNIP1-201ENST00000296215 A8MXQ7 604 aa12.44□□□□□ -0.42
SNIP1-201ENST00000296215 MTSS1O43312 755 aa12.44□□□□□ -0.42
SNIP1-201ENST00000296215 GNA14O95837 355 aa12.44□□□□□ -0.42
SNIP1-201ENST00000296215 GSNP06396 782 aa12.44□□□□□ -0.42
SNIP1-201ENST00000296215 ALOX5P09917 674 aa12.44□□□□□ -0.42
SNIP1-201ENST00000296215 DNAJC3Q13217 504 aa12.44□□□□□ -0.42
SNIP1-201ENST00000296215 LSAMPQ13449 338 aa12.44□□□□□ -0.42
SNIP1-201ENST00000296215 SF3B3Q15393 1217 aaKnown RBP12.44□□□□□ -0.42
SNIP1-201ENST00000296215 MCMDC2Q4G0Z9 681 aa12.44□□□□□ -0.42
SNIP1-201ENST00000296215 VPS37DQ86XT2 251 aa12.44□□□□□ -0.42
SNIP1-201ENST00000296215 NUP93Q8N1F7 819 aa12.44□□□□□ -0.42
SNIP1-201ENST00000296215 PNMA3Q9UL41 463 aa12.44□□□□□ -0.42
SNIP1-201ENST00000296215 SEMA3EO15041 775 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 TCF7P36402 384 aaPredicted RBP12.43□□□□□ -0.42
SNIP1-201ENST00000296215 KCNMA1Q12791 1236 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 KRR1Q13601 381 aaKnown RBP12.43□□□□□ -0.42
SNIP1-201ENST00000296215 ACAP2Q15057 778 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 FSCBQ5H9T9 825 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 DPY19L2Q6NUT2 758 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 ATG14Q6ZNE5 492 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 SMYD4Q8IYR2 804 aaPredicted RBP12.43□□□□□ -0.42
SNIP1-201ENST00000296215 CASKIN2Q8WXE0 1202 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 ECSITQ9BQ95 431 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 OSBPL6Q9BZF3 934 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.43□□□□□ -0.42
SNIP1-201ENST00000296215 RETREG1Q9H6L5 497 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 VTA1Q9NP79 307 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 VPS4AQ9UN37 437 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 SLC8A2Q9UPR5 921 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 LRRC42Q9Y546 428 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 EVPLLA8MZ36 301 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 TNPO2O14787 897 aaKnown RBP12.43□□□□□ -0.42
SNIP1-201ENST00000296215 CPA2P48052 419 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 FXR1P51114 621 aaKnown RBP eCLIP12.43□□□□□ -0.42
SNIP1-201ENST00000296215 TPTEP56180 551 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 HDDC2Q7Z4H3 204 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 DDX42Q86XP3 938 aaKnown RBP eCLIP12.43□□□□□ -0.42
SNIP1-201ENST00000296215 UNC45BQ8IWX7 931 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 MTMR9Q96QG7 549 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 TUBGCP2Q9BSJ2 902 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 SLC12A4Q9UP95 1085 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 GIT1Q9Y2X7 761 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 NPHP3-ACAD11A0A0J9YXS1 232 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 PSMD11O00231 422 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 RAD51CO43502 376 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 CPA3P15088 417 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 PHC1P78364 1004 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 GFPT1Q06210 699 aaPredicted RBP12.43□□□□□ -0.42
SNIP1-201ENST00000296215 TRMT5Q32P41 509 aaKnown RBP12.43□□□□□ -0.42
SNIP1-201ENST00000296215 SATL1Q86VE3 508 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 LRRC20Q8TCA0 184 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 RASSF5Q8WWW0 418 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 CLIP3Q96DZ5 547 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 PAGR1Q9BTK6 254 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 KIFC3Q9BVG8 833 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 JMJD4Q9H9V9 463 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 HERC5Q9UII4 1024 aaKnown RBP12.43□□□□□ -0.42
SNIP1-201ENST00000296215 POGZQ7Z3K3 1410 aa12.43□□□□□ -0.42
SNIP1-201ENST00000296215 RNF103-CHMP3A0A140T963 221 aa12.42□□□□□ -0.42
SNIP1-201ENST00000296215 H0Y626 953 aa12.42□□□□□ -0.42
SNIP1-201ENST00000296215 TSC22D2O75157 780 aa12.42□□□□□ -0.42
SNIP1-201ENST00000296215 FAM228BP0C875 321 aa12.42□□□□□ -0.42
SNIP1-201ENST00000296215 GYS1P13807 737 aa12.42□□□□□ -0.42
SNIP1-201ENST00000296215 PUDPQ08623 228 aa12.42□□□□□ -0.42
SNIP1-201ENST00000296215 TMEM67Q5HYA8 995 aa12.42□□□□□ -0.42
SNIP1-201ENST00000296215 C4orf22Q6V702 233 aa12.42□□□□□ -0.42
SNIP1-201ENST00000296215 ZC3H15Q8WU90 426 aaKnown RBP12.42□□□□□ -0.42
SNIP1-201ENST00000296215 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.42□□□□□ -0.42
SNIP1-201ENST00000296215 UCKL1Q9NWZ5 548 aa12.42□□□□□ -0.42
SNIP1-201ENST00000296215 AMACRQ9UHK6 382 aa12.42□□□□□ -0.42
SNIP1-201ENST00000296215 RPL26L1Q9UNX3 145 aaKnown RBP12.42□□□□□ -0.42
SNIP1-201ENST00000296215 AGPSO00116 658 aa12.42□□□□□ -0.42
SNIP1-201ENST00000296215 LRRC63Q05C16 580 aa12.42□□□□□ -0.42
SNIP1-201ENST00000296215 PARP6Q2NL67 630 aa12.42□□□□□ -0.42
SNIP1-201ENST00000296215 ERMARDQ5T6L9 678 aa12.42□□□□□ -0.42
SNIP1-201ENST00000296215 EMC10Q5UCC4 262 aa12.42□□□□□ -0.42
SNIP1-201ENST00000296215 FARSBQ9NSD9 589 aaKnown RBP12.42□□□□□ -0.42
SNIP1-201ENST00000296215 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.42□□□□□ -0.42
SNIP1-201ENST00000296215 ANKFY1Q9P2R3 1169 aa12.42□□□□□ -0.42
SNIP1-201ENST00000296215 F8W810 466 aa12.42□□□□□ -0.42
SNIP1-201ENST00000296215 ZBTB11O95625 1053 aaPredicted RBP12.42□□□□□ -0.42
SNIP1-201ENST00000296215 ATF2P15336 505 aa12.42□□□□□ -0.42
SNIP1-201ENST00000296215 CDC25AP30304 524 aa12.42□□□□□ -0.42
SNIP1-201ENST00000296215 GEMIN4P57678 1058 aaKnown RBP12.42□□□□□ -0.42
SNIP1-201ENST00000296215 CTC1Q2NKJ3 1217 aa12.42□□□□□ -0.42
SNIP1-201ENST00000296215 TAF1BQ53T94 588 aaPredicted RBP12.42□□□□□ -0.42
SNIP1-201ENST00000296215 ZBTB41Q5SVQ8 909 aa12.42□□□□□ -0.42
SNIP1-201ENST00000296215 KRT40Q6A162 431 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms