RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 FMNL3Q8IVF7 1028 aa21.69■■□□□ 1.06
VPS53-201ENST00000291074 PIK3R5Q8WYR1 880 aa21.69■■□□□ 1.06
VPS53-201ENST00000291074 PCDHB18PQ96TA0 734 aa21.69■■□□□ 1.06
VPS53-201ENST00000291074 TAF1DQ9H5J8 278 aaPredicted RBP21.69■■□□□ 1.06
VPS53-201ENST00000291074 DAAM1Q9Y4D1 1078 aa21.69■■□□□ 1.06
VPS53-201ENST00000291074 FGGP02679 453 aa21.68■■□□□ 1.06
VPS53-201ENST00000291074 SMTNP53814 917 aa21.68■■□□□ 1.06
VPS53-201ENST00000291074 ZNF211Q13398 564 aaPredicted RBP21.68■■□□□ 1.06
VPS53-201ENST00000291074 PRPF4BQ13523 1007 aaKnown RBP21.68■■□□□ 1.06
VPS53-201ENST00000291074 DCAF15Q66K64 600 aa21.68■■□□□ 1.06
VPS53-201ENST00000291074 SWSAP1Q6NVH7 229 aa21.68■■□□□ 1.06
VPS53-201ENST00000291074 LRRC31Q6UY01 552 aa21.68■■□□□ 1.06
VPS53-201ENST00000291074 NOP9Q86U38 636 aaKnown RBP21.68■■□□□ 1.06
VPS53-201ENST00000291074 GPRASP2Q96D09 838 aa21.68■■□□□ 1.06
VPS53-201ENST00000291074 IWS1Q96ST2 819 aa21.68■■□□□ 1.06
VPS53-201ENST00000291074 CELF4Q9BZC1 486 aaKnown RBP21.68■■□□□ 1.06
VPS53-201ENST00000291074 STBD1O95210 358 aa21.68■■□□□ 1.06
VPS53-201ENST00000291074 DNAJC21Q5F1R6 531 aaKnown RBP21.68■■□□□ 1.06
VPS53-201ENST00000291074 CFAP58Q5T655 872 aa21.68■■□□□ 1.06
VPS53-201ENST00000291074 ISCUQ9H1K1 167 aa21.68■■□□□ 1.06
VPS53-201ENST00000291074 NEUROG2Q9H2A3 272 aa21.68■■□□□ 1.06
VPS53-201ENST00000291074 MAPK13O15264 365 aa21.67■■□□□ 1.06
VPS53-201ENST00000291074 CYP26A1O43174 497 aa21.67■■□□□ 1.06
VPS53-201ENST00000291074 ATMINO43313 823 aaPredicted RBP21.67■■□□□ 1.06
VPS53-201ENST00000291074 OPA1O60313 960 aa21.67■■□□□ 1.06
VPS53-201ENST00000291074 CHRNB2P17787 502 aa21.67■■□□□ 1.06
VPS53-201ENST00000291074 DSG3P32926 999 aa21.67■■□□□ 1.06
VPS53-201ENST00000291074 COPB2P35606 906 aa21.67■■□□□ 1.06
VPS53-201ENST00000291074 SLC47A2Q86VL8 602 aa21.67■■□□□ 1.06
VPS53-201ENST00000291074 CCDC60Q8IWA6 550 aaPredicted RBP21.67■■□□□ 1.06
VPS53-201ENST00000291074 IQCKQ8N0W5 287 aa21.67■■□□□ 1.06
VPS53-201ENST00000291074 EPS8L1Q8TE68 723 aa21.67■■□□□ 1.06
VPS53-201ENST00000291074 AS3MTQ9HBK9 375 aa21.67■■□□□ 1.06
VPS53-201ENST00000291074 EXOC7Q9UPT5 735 aa21.67■■□□□ 1.06
VPS53-201ENST00000291074 MYH9P35579 1960 aaKnown RBP21.67■■□□□ 1.06
VPS53-201ENST00000291074 TMEM110-MUSTN1A8MSY1 372 aa21.67■■□□□ 1.06
VPS53-201ENST00000291074 GOLGA8KD6RF30 607 aa21.67■■□□□ 1.06
VPS53-201ENST00000291074 PARD3BQ8TEW8 1205 aa21.67■■□□□ 1.06
VPS53-201ENST00000291074 ALG3Q92685 438 aa21.67■■□□□ 1.06
VPS53-201ENST00000291074 TMOD4Q9NZQ9 345 aa21.67■■□□□ 1.06
VPS53-201ENST00000291074 CTTNBP2NLQ9P2B4 639 aa21.67■■□□□ 1.06
VPS53-201ENST00000291074 SEPT9Q9UHD8 586 aaPredicted RBP21.67■■□□□ 1.06
VPS53-201ENST00000291074 ZNF112Q9UJU3 913 aa21.67■■□□□ 1.06
VPS53-201ENST00000291074 NOCTQ9UK39 431 aaKnown RBP21.67■■□□□ 1.06
VPS53-201ENST00000291074 ZNF541Q9H0D2 1346 aa21.67■■□□□ 1.06
VPS53-201ENST00000291074 ZNF233A6NK53 670 aa21.66■■□□□ 1.06
VPS53-201ENST00000291074 TTI1O43156 1089 aa21.66■■□□□ 1.06
VPS53-201ENST00000291074 FDX1P10109 184 aa21.66■■□□□ 1.06
VPS53-201ENST00000291074 KCTD16Q68DU8 428 aa21.66■■□□□ 1.06
VPS53-201ENST00000291074 AADACL2Q6P093 401 aa21.66■■□□□ 1.06
VPS53-201ENST00000291074 SH2D3CQ8N5H7 860 aa21.66■■□□□ 1.06
VPS53-201ENST00000291074 NSUN6Q8TEA1 469 aaKnown RBP21.66■■□□□ 1.06
VPS53-201ENST00000291074 PNMA2Q9UL42 364 aa21.66■■□□□ 1.06
VPS53-201ENST00000291074 LCTP09848 1927 aa21.66■■□□□ 1.06
VPS53-201ENST00000291074 CCDC188H7C350 402 aa21.66■■□□□ 1.06
VPS53-201ENST00000291074 TAS1R2Q8TE23 839 aa21.66■■□□□ 1.06
VPS53-201ENST00000291074 WHAMMQ8TF30 809 aa21.66■■□□□ 1.06
VPS53-201ENST00000291074 RNPC3Q96LT9 517 aaKnown RBP21.66■■□□□ 1.06
VPS53-201ENST00000291074 A1CFQ9NQ94 594 aaKnown RBP21.66■■□□□ 1.06
VPS53-201ENST00000291074 XPNPEP1Q9NQW7 623 aa21.66■■□□□ 1.06
VPS53-201ENST00000291074 USP20Q9Y2K6 914 aa21.66■■□□□ 1.06
VPS53-201ENST00000291074 MARCKSL1P49006 195 aa21.65■■□□□ 1.06
VPS53-201ENST00000291074 SNRPFP62306 86 aaKnown RBP21.65■■□□□ 1.06
VPS53-201ENST00000291074 PPFIA1Q13136 1202 aa21.65■■□□□ 1.06
VPS53-201ENST00000291074 FAM71AQ8IYT1 594 aa21.65■■□□□ 1.06
VPS53-201ENST00000291074 MREGQ8N565 214 aa21.65■■□□□ 1.06
VPS53-201ENST00000291074 RDM1Q8NG50 284 aa21.65■■□□□ 1.06
VPS53-201ENST00000291074 POMGNT1Q8WZA1 660 aa21.65■■□□□ 1.06
VPS53-201ENST00000291074 SENP7Q9BQF6 1050 aa21.65■■□□□ 1.06
VPS53-201ENST00000291074 JPH1Q9HDC5 661 aaPredicted RBP21.65■■□□□ 1.06
VPS53-201ENST00000291074 CYP39A1Q9NYL5 469 aa21.65■■□□□ 1.06
VPS53-201ENST00000291074 PRKCEQ02156 737 aa21.65■■□□□ 1.06
VPS53-201ENST00000291074 PDE4CQ08493 712 aa21.65■■□□□ 1.06
VPS53-201ENST00000291074 PRKG1Q13976 671 aa21.65■■□□□ 1.06
VPS53-201ENST00000291074 KRT39Q6A163 491 aa21.65■■□□□ 1.06
VPS53-201ENST00000291074 XRRA1Q6P2D8 792 aa21.65■■□□□ 1.06
VPS53-201ENST00000291074 OTUD6AQ7L8S5 288 aa21.65■■□□□ 1.06
VPS53-201ENST00000291074 TRPM4Q8TD43 1214 aa21.65■■□□□ 1.06
VPS53-201ENST00000291074 DHX38Q92620 1227 aaKnown RBP21.65■■□□□ 1.06
VPS53-201ENST00000291074 ATP6V0A1Q93050 837 aa21.65■■□□□ 1.06
VPS53-201ENST00000291074 ALG6Q9Y672 507 aa21.65■■□□□ 1.06
VPS53-201ENST00000291074 DAPK3O43293 454 aa21.64■■□□□ 1.06
VPS53-201ENST00000291074 PEX10O60683 326 aa21.64■■□□□ 1.06
VPS53-201ENST00000291074 MMEP08473 750 aa21.64■■□□□ 1.06
VPS53-201ENST00000291074 DLATP10515 647 aaKnown RBP21.64■■□□□ 1.06
VPS53-201ENST00000291074 SLC17A8Q8NDX2 589 aa21.64■■□□□ 1.06
VPS53-201ENST00000291074 KIFAP3Q92845 792 aa21.64■■□□□ 1.06
VPS53-201ENST00000291074 ERVK-5Q9HDB9 667 aa21.64■■□□□ 1.06
VPS53-201ENST00000291074 ADAMTS5Q9UNA0 930 aa21.64■■□□□ 1.06
VPS53-201ENST00000291074 FZD9O00144 591 aa21.64■■□□□ 1.05
VPS53-201ENST00000291074 HNRNPDLO14979 420 aaKnown RBP21.64■■□□□ 1.05
VPS53-201ENST00000291074 CALCAP01258 141 aa21.64■■□□□ 1.05
VPS53-201ENST00000291074 ACTR2P61160 394 aa21.64■■□□□ 1.05
VPS53-201ENST00000291074 TTC19Q6DKK2 380 aaPredicted RBP21.64■■□□□ 1.05
VPS53-201ENST00000291074 CPNE8Q86YQ8 564 aa21.64■■□□□ 1.05
VPS53-201ENST00000291074 RHOT2Q8IXI1 618 aa21.64■■□□□ 1.05
VPS53-201ENST00000291074 KRT35Q92764 455 aa21.64■■□□□ 1.05
VPS53-201ENST00000291074 SLC9A2Q9UBY0 812 aa21.64■■□□□ 1.05
VPS53-201ENST00000291074 BHMG1C9JSJ3 638 aaPredicted RBP21.63■■□□□ 1.05
VPS53-201ENST00000291074 RPS6KA5O75582 802 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms