RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 CERS4Q9HA82 394 aa10.15□□□□□ -0.78
HMGN1-201ENST00000288344 PTPRHQ9HD43 1115 aa10.15□□□□□ -0.78
HMGN1-201ENST00000288344 LMCD1Q9NZU5 365 aa10.15□□□□□ -0.78
HMGN1-201ENST00000288344 ARHGAP28Q9P2N2 729 aa10.15□□□□□ -0.78
HMGN1-201ENST00000288344 TFIP11Q9UBB9 837 aaKnown RBP10.15□□□□□ -0.78
HMGN1-201ENST00000288344 MRPL42Q9Y6G3 142 aaKnown RBP10.15□□□□□ -0.78
HMGN1-201ENST00000288344 KIAA1671Q9BY89 1806 aa10.15□□□□□ -0.78
HMGN1-201ENST00000288344 TCHHQ07283 1943 aa10.15□□□□□ -0.79
HMGN1-201ENST00000288344 ARHGEF35A5YM69 484 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 B4GALT5O43286 388 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 B4GALT3O60512 393 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 OFD1O75665 1012 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 EFEMP2O95967 443 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 RB1P06400 928 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 PLA2G4BP0C869 781 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 STAG3L1P0CL83 205 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 FGFR1P11362 822 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 SFPQP23246 707 aaKnown RBP eCLIP10.14□□□□□ -0.79
HMGN1-201ENST00000288344 AXLP30530 894 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 NAMPTP43490 491 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 KARSQ15046 597 aaKnown RBP10.14□□□□□ -0.79
HMGN1-201ENST00000288344 PROX2Q3B8N5 592 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 SPECC1Q5M775 1068 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 NT5DC1Q5TFE4 455 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 ATL3Q6DD88 541 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 ARNTL2Q8WYA1 636 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 KIFAP3Q92845 792 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 SAMD11Q96NU1 681 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 YME1L1Q96TA2 773 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 STRA6Q9BX79 667 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 NT5C3AQ9H0P0 336 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 C17orf75Q9HAS0 396 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 FAM105AQ9NUU6 356 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 DACT1Q9NYF0 836 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 KCND2Q9NZV8 630 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 HCSTQ9UBK5 93 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 PCDHB7Q9Y5E2 793 aa10.14□□□□□ -0.79
HMGN1-201ENST00000288344 DENND3A2RUS2 1198 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 ACKR2O00590 384 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 HIP1RO75146 1068 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 YEATS4O95619 227 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 CD46P15529 392 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 ZSCAN20P17040 1043 aaPredicted RBP10.13□□□□□ -0.79
HMGN1-201ENST00000288344 PLCG1P19174 1290 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 NCLP19338 710 aaKnown RBP10.13□□□□□ -0.79
HMGN1-201ENST00000288344 DNAJB1P25685 340 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 NPTX2P47972 431 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 GIT2Q14161 759 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 SHC4Q6S5L8 630 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 MAEAQ7L5Y9 396 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 CATSPER4Q7RTX7 472 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 FIBCD1Q8N539 461 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 SPPL3Q8TCT6 385 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 SPIRE2Q8WWL2 714 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 RAD54LQ92698 747 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 SYMPKQ92797 1274 aaKnown RBP10.13□□□□□ -0.79
HMGN1-201ENST00000288344 P2RX5Q93086 422 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 RNF166Q96A37 237 aaPredicted RBP10.13□□□□□ -0.79
HMGN1-201ENST00000288344 DNAJC19Q96DA6 116 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 CHAMP1Q96JM3 812 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 PRIMPOLQ96LW4 560 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 PLIN2Q99541 437 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 TIPINQ9BVW5 301 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 PLVAPQ9BX97 442 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 EIF2AQ9BY44 585 aaKnown RBP10.13□□□□□ -0.79
HMGN1-201ENST00000288344 TMEM117Q9H0C3 514 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 TMEM134Q9H6X4 195 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 TYW1Q9NV66 732 aaKnown RBP10.13□□□□□ -0.79
HMGN1-201ENST00000288344 MIOSQ9NXC5 875 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 PLAGL2Q9UPG8 496 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 USP20Q9Y2K6 914 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 PCDHB2Q9Y5E7 798 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 TTC28Q96AY4 2481 aa10.13□□□□□ -0.79
HMGN1-201ENST00000288344 NPHP3-ACAD11A0A0J9YXS1 232 aa10.12□□□□□ -0.79
HMGN1-201ENST00000288344 SFI1A8K8P3 1242 aa10.12□□□□□ -0.79
HMGN1-201ENST00000288344 GRM6O15303 877 aa10.12□□□□□ -0.79
HMGN1-201ENST00000288344 MEFVO15553 781 aaPredicted RBP10.12□□□□□ -0.79
HMGN1-201ENST00000288344 PROZP22891 400 aa10.12□□□□□ -0.79
HMGN1-201ENST00000288344 UBA7P41226 1012 aa10.12□□□□□ -0.79
HMGN1-201ENST00000288344 CEBPZQ03701 1054 aaKnown RBP10.12□□□□□ -0.79
HMGN1-201ENST00000288344 TFDP1Q14186 410 aa10.12□□□□□ -0.79
HMGN1-201ENST00000288344 BTG3Q14201 252 aaPredicted RBP10.12□□□□□ -0.79
HMGN1-201ENST00000288344 TMEM161BQ8NDZ6 487 aa10.12□□□□□ -0.79
HMGN1-201ENST00000288344 LPPQ93052 612 aa10.12□□□□□ -0.79
HMGN1-201ENST00000288344 CCDC51Q96ER9 411 aa10.12□□□□□ -0.79
HMGN1-201ENST00000288344 CPB2Q96IY4 423 aa10.12□□□□□ -0.79
HMGN1-201ENST00000288344 KIFC3Q9BVG8 833 aa10.12□□□□□ -0.79
HMGN1-201ENST00000288344 SLC4A5Q9BY07 1137 aa10.12□□□□□ -0.79
HMGN1-201ENST00000288344 CXCL16Q9H2A7 254 aa10.12□□□□□ -0.79
HMGN1-201ENST00000288344 PIN4Q9Y237 131 aaKnown RBP10.12□□□□□ -0.79
HMGN1-201ENST00000288344 VPS9D1Q9Y2B5 631 aa10.12□□□□□ -0.79
HMGN1-201ENST00000288344 COL4A4P53420 1690 aaPredicted RBP10.12□□□□□ -0.79
HMGN1-201ENST00000288344 NCOR1O75376 2440 aa10.12□□□□□ -0.79
HMGN1-201ENST00000288344 PLXNA4Q9HCM2 1894 aa10.12□□□□□ -0.79
HMGN1-201ENST00000288344 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.11□□□□□ -0.79
HMGN1-201ENST00000288344 FAM237AA0A1B0GTK4 181 aa10.11□□□□□ -0.79
HMGN1-201ENST00000288344 FRMD3A2A2Y4 597 aa10.11□□□□□ -0.79
HMGN1-201ENST00000288344 SPTLC2O15270 562 aa10.11□□□□□ -0.79
HMGN1-201ENST00000288344 ITGB1P05556 798 aa10.11□□□□□ -0.79
HMGN1-201ENST00000288344 FOSL2P15408 326 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms