RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 ABCB4P21439 1286 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 CCDC144BQ3MJ40 725 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 GLB1LQ6UWU2 654 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 ENGASEQ8NFI3 743 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 KANSL3Q9P2N6 904 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 MYMKA6NI61 221 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 MCF2P10911 925 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 RALAP11233 206 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 PPARGP37231 505 aaPredicted RBP14.63□□□□□ -0.07
LDLR-201ENST00000252444 SMYD4Q8IYR2 804 aaPredicted RBP14.63□□□□□ -0.07
LDLR-201ENST00000252444 IFT81Q8WYA0 676 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.63□□□□□ -0.072e-7■■■■■ 64.2
LDLR-201ENST00000252444 NXF1Q9UBU9 619 aaKnown RBP14.63□□□□□ -0.07
LDLR-201ENST00000252444 FRMPD4Q14CM0 1322 aa14.63□□□□□ -0.07
LDLR-201ENST00000252444 TJP3O95049 919 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 OR6B2Q6IFH4 312 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 EFCAB12Q6NXP0 572 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 KIF12Q96FN5 646 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 APEX2Q9UBZ4 518 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 CPSF3Q9UKF6 684 aaKnown RBP14.62□□□□□ -0.07
LDLR-201ENST00000252444 TBX20Q9UMR3 447 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 CA12O43570 354 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 GRB10Q13322 594 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 DENND2CQ68D51 928 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 C4orf50Q6ZRC1 276 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 SYDE1Q6ZW31 735 aaPredicted RBP14.62□□□□□ -0.07
LDLR-201ENST00000252444 DHX40Q8IX18 779 aaKnown RBP14.62□□□□□ -0.07
LDLR-201ENST00000252444 FAM76AQ8TAV0 307 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 SYT17Q9BSW7 474 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 PFDN4Q9NQP4 134 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 STK39Q9UEW8 545 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 PRR29P0C7W0 189 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 NFX1Q12986 1120 aaKnown RBP14.62□□□□□ -0.07
LDLR-201ENST00000252444 ZPBP2Q6X784 338 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.62□□□□□ -0.076e-6■□□□□ 9.8
LDLR-201ENST00000252444 OGTO15294 1046 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 ENPEPQ07075 957 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 C4orf22Q6V702 233 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 PLPPR4Q7Z2D5 763 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 TBC1D31Q96DN5 1066 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 ERGIC2Q96RQ1 377 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 LBHD1Q9BQE6 289 aaPredicted RBP14.62□□□□□ -0.07
LDLR-201ENST00000252444 COLEC11Q9BWP8 271 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 FAM124BQ9H5Z6 455 aaPredicted RBP14.62□□□□□ -0.07
LDLR-201ENST00000252444 CYP3A43Q9HB55 503 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 MROH7Q68CQ1 1323 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 SMAPO00193 183 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 PODXLO00592 558 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 RTN2O75298 545 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 ASPHQ12797 758 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 SLMAPQ14BN4 828 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 COBLL1Q53SF7 1204 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 MPZL3Q6UWV2 235 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 RFX6Q8HWS3 928 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 UBLCP1Q8WVY7 318 aaPredicted RBP14.62□□□□□ -0.07
LDLR-201ENST00000252444 MED15Q96RN5 788 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 FAM129AQ9BZQ8 928 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 TMEM134Q9H6X4 195 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 PIN4Q9Y237 131 aaKnown RBP14.62□□□□□ -0.07
LDLR-201ENST00000252444 UBIAD1Q9Y5Z9 338 aa14.62□□□□□ -0.07
LDLR-201ENST00000252444 LYPLA2O95372 231 aa14.61□□□□□ -0.07
LDLR-201ENST00000252444 KRT1P04264 644 aa14.61□□□□□ -0.07
LDLR-201ENST00000252444 DNAJC21Q5F1R6 531 aaKnown RBP14.61□□□□□ -0.07
LDLR-201ENST00000252444 SEPT8Q92599 483 aa14.61□□□□□ -0.07
LDLR-201ENST00000252444 FRMD8P1Q9BZ68 369 aaPredicted RBP14.61□□□□□ -0.07
LDLR-201ENST00000252444 SENP2Q9HC62 589 aa14.61□□□□□ -0.07
LDLR-201ENST00000252444 ADAM22Q9P0K1 906 aa14.61□□□□□ -0.07
LDLR-201ENST00000252444 FMO5P49326 533 aa14.61□□□□□ -0.07
LDLR-201ENST00000252444 SNRNP35Q16560 246 aaKnown RBP14.61□□□□□ -0.07
LDLR-201ENST00000252444 PARVAQ9NVD7 372 aa14.61□□□□□ -0.07
LDLR-201ENST00000252444 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.61□□□□□ -0.07
LDLR-201ENST00000252444 VIRMAQ69YN4 1812 aaKnown RBP14.61□□□□□ -0.07
LDLR-201ENST00000252444 GOLGA8KD6RF30 607 aa14.61□□□□□ -0.07
LDLR-201ENST00000252444 PSMD3O43242 534 aa14.61□□□□□ -0.07
LDLR-201ENST00000252444 CUL1Q13616 776 aa14.61□□□□□ -0.07
LDLR-201ENST00000252444 FAM110CQ1W6H9 321 aa14.61□□□□□ -0.07
LDLR-201ENST00000252444 FYB2Q5VWT5 728 aa14.61□□□□□ -0.07
LDLR-201ENST00000252444 SCYL2Q6P3W7 929 aa14.61□□□□□ -0.07
LDLR-201ENST00000252444 GJB4Q9NTQ9 266 aa14.61□□□□□ -0.07
LDLR-201ENST00000252444 MID2Q9UJV3 735 aa14.61□□□□□ -0.07
LDLR-201ENST00000252444 RGL1Q9NZL6 768 aa14.61□□□□□ -0.07
LDLR-201ENST00000252444 GNA15P30679 374 aa14.6□□□□□ -0.07
LDLR-201ENST00000252444 CDK17Q00537 523 aa14.6□□□□□ -0.07
LDLR-201ENST00000252444 ILF2Q12905 390 aaKnown RBP14.6□□□□□ -0.07
LDLR-201ENST00000252444 CFAP157Q5JU67 520 aa14.6□□□□□ -0.07
LDLR-201ENST00000252444 LRRC31Q6UY01 552 aa14.6□□□□□ -0.07
LDLR-201ENST00000252444 NUDT18Q6ZVK8 323 aa14.6□□□□□ -0.07
LDLR-201ENST00000252444 EMSYQ7Z589 1322 aa14.6□□□□□ -0.07
LDLR-201ENST00000252444 UBR2Q8IWV8 1755 aa14.6□□□□□ -0.07
LDLR-201ENST00000252444 CYP2C19P33261 490 aa14.6□□□□□ -0.07
LDLR-201ENST00000252444 MAP7Q14244 749 aa14.6□□□□□ -0.07
LDLR-201ENST00000252444 ZNF518BQ9C0D4 1074 aa14.6□□□□□ -0.07
LDLR-201ENST00000252444 ECEL1O95672 775 aa14.6□□□□□ -0.07
LDLR-201ENST00000252444 NT5DC1Q5TFE4 455 aa14.6□□□□□ -0.07
LDLR-201ENST00000252444 PLCD4Q9BRC7 762 aa14.6□□□□□ -0.07
LDLR-201ENST00000252444 SAMD15Q9P1V8 674 aa14.6□□□□□ -0.07
LDLR-201ENST00000252444 ABCA3Q99758 1704 aa14.6□□□□□ -0.07
LDLR-201ENST00000252444 IGKV6D-41A0A0C4DH26 115 aa14.6□□□□□ -0.07
LDLR-201ENST00000252444 ADM5C9JUS6 153 aa14.6□□□□□ -0.07
LDLR-201ENST00000252444 HSD17B4P51659 736 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms