RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 LETM2Q2VYF4 491 aa11.54□□□□□ -0.56
VPS50-201ENST00000251739 TPRNQ4KMQ1 711 aa11.54□□□□□ -0.56
VPS50-201ENST00000251739 NOMO2Q5JPE7 1267 aa11.54□□□□□ -0.56
VPS50-201ENST00000251739 EARS2Q5JPH6 523 aaKnown RBP11.54□□□□□ -0.56
VPS50-201ENST00000251739 UBXN11Q5T124 520 aa11.54□□□□□ -0.56
VPS50-201ENST00000251739 AGMOQ6ZNB7 445 aa11.54□□□□□ -0.56
VPS50-201ENST00000251739 NUDT18Q6ZVK8 323 aa11.54□□□□□ -0.56
VPS50-201ENST00000251739 CATSPER4Q7RTX7 472 aa11.54□□□□□ -0.56
VPS50-201ENST00000251739 DDX53Q86TM3 631 aaKnown RBP11.54□□□□□ -0.56
VPS50-201ENST00000251739 C4orf19Q8IY42 314 aa11.54□□□□□ -0.56
VPS50-201ENST00000251739 VPS52Q8N1B4 723 aa11.54□□□□□ -0.56
VPS50-201ENST00000251739 SLC22A17Q8WUG5 538 aa11.54□□□□□ -0.56
VPS50-201ENST00000251739 TNFRSF25Q93038 417 aa11.54□□□□□ -0.56
VPS50-201ENST00000251739 NLRP4Q96MN2 994 aa11.54□□□□□ -0.56
VPS50-201ENST00000251739 NECTIN4Q96NY8 510 aa11.54□□□□□ -0.56
VPS50-201ENST00000251739 LXNQ9BS40 222 aa11.54□□□□□ -0.56
VPS50-201ENST00000251739 APOL5Q9BWW9 433 aa11.54□□□□□ -0.56
VPS50-201ENST00000251739 POMKQ9H5K3 350 aa11.54□□□□□ -0.56
VPS50-201ENST00000251739 NRDE2Q9H7Z3 1164 aa11.54□□□□□ -0.56
VPS50-201ENST00000251739 PDRG1Q9NUG6 133 aa11.54□□□□□ -0.56
VPS50-201ENST00000251739 DZANK1Q9NVP4 752 aa11.54□□□□□ -0.56
VPS50-201ENST00000251739 DNAJB4Q9UDY4 337 aa11.54□□□□□ -0.56
VPS50-201ENST00000251739 TPCN1Q9ULQ1 816 aa11.54□□□□□ -0.56
VPS50-201ENST00000251739 ZNF292O60281 2723 aa11.53□□□□□ -0.56
VPS50-201ENST00000251739 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.53□□□□□ -0.56
VPS50-201ENST00000251739 CCDC194A0A1B0GVG4 234 aa11.53□□□□□ -0.56
VPS50-201ENST00000251739 GAS2O43903 313 aaKnown RBP11.53□□□□□ -0.56
VPS50-201ENST00000251739 EFEMP2O95967 443 aa11.53□□□□□ -0.56
VPS50-201ENST00000251739 P4HBP07237 508 aaKnown RBP11.53□□□□□ -0.56
VPS50-201ENST00000251739 RFC5P40937 340 aa11.53□□□□□ -0.56
VPS50-201ENST00000251739 SLC11A1P49279 550 aa11.53□□□□□ -0.56
VPS50-201ENST00000251739 LAMTOR4Q0VGL1 99 aa11.53□□□□□ -0.56
VPS50-201ENST00000251739 TCF15Q12870 199 aa11.53□□□□□ -0.56
VPS50-201ENST00000251739 EPHA7Q15375 998 aa11.53□□□□□ -0.56
VPS50-201ENST00000251739 PTPN14Q15678 1187 aa11.53□□□□□ -0.56
VPS50-201ENST00000251739 KIAA1841Q6NSI8 718 aa11.53□□□□□ -0.56
VPS50-201ENST00000251739 SRGAP1Q7Z6B7 1085 aa11.53□□□□□ -0.56
VPS50-201ENST00000251739 LAPTM4BQ86VI4 370 aa11.53□□□□□ -0.56
VPS50-201ENST00000251739 ZNF280BQ86YH2 543 aa11.53□□□□□ -0.56
VPS50-201ENST00000251739 PRPF31Q8WWY3 499 aaKnown RBP11.53□□□□□ -0.56
VPS50-201ENST00000251739 AUTS2Q8WXX7 1259 aa11.53□□□□□ -0.56
VPS50-201ENST00000251739 SLC7A3Q8WY07 619 aa11.53□□□□□ -0.56
VPS50-201ENST00000251739 XPNPEP1Q9NQW7 623 aa11.53□□□□□ -0.56
VPS50-201ENST00000251739 PCDHB2Q9Y5E7 798 aa11.53□□□□□ -0.56
VPS50-201ENST00000251739 CNTNAP2Q9UHC6 1331 aa11.53□□□□□ -0.56
VPS50-201ENST00000251739 PTPRZ1P23471 2315 aaPredicted RBP11.52□□□□□ -0.57
VPS50-201ENST00000251739 C2CD4DB7Z1M9 353 aa11.52□□□□□ -0.57
VPS50-201ENST00000251739 DKC1O60832 514 aaKnown RBP eCLIP11.52□□□□□ -0.57
VPS50-201ENST00000251739 LILRB3O75022 631 aa11.52□□□□□ -0.57
VPS50-201ENST00000251739 LYPLA2O95372 231 aa11.52□□□□□ -0.57
VPS50-201ENST00000251739 CXCL14O95715 111 aa11.52□□□□□ -0.57
VPS50-201ENST00000251739 FDPSP14324 419 aaKnown RBP11.52□□□□□ -0.57
VPS50-201ENST00000251739 EPCAMP16422 314 aa11.52□□□□□ -0.57
VPS50-201ENST00000251739 YWHABP31946 246 aaKnown RBP11.52□□□□□ -0.57
VPS50-201ENST00000251739 MTHFRP42898 656 aa11.52□□□□□ -0.57
VPS50-201ENST00000251739 AFF1P51825 1210 aaKnown RBP11.52□□□□□ -0.57
VPS50-201ENST00000251739 VCPP55072 806 aaKnown RBP11.52□□□□□ -0.57
VPS50-201ENST00000251739 GIT2Q14161 759 aa11.52□□□□□ -0.57
VPS50-201ENST00000251739 EMC2Q15006 297 aa11.52□□□□□ -0.57
VPS50-201ENST00000251739 LONRF3Q496Y0 759 aa11.52□□□□□ -0.57
VPS50-201ENST00000251739 PIK3AP1Q6ZUJ8 805 aa11.52□□□□□ -0.57
VPS50-201ENST00000251739 SUGP1Q8IWZ8 645 aaKnown RBP11.52□□□□□ -0.57
VPS50-201ENST00000251739 EXOC8Q8IYI6 725 aa11.52□□□□□ -0.57
VPS50-201ENST00000251739 FEZF2Q8TBJ5 459 aa11.52□□□□□ -0.57
VPS50-201ENST00000251739 PSPC1Q8WXF1 523 aaKnown RBP11.52□□□□□ -0.57
VPS50-201ENST00000251739 TMEM143Q96AN5 459 aa11.52□□□□□ -0.57
VPS50-201ENST00000251739 CEP170P1Q96L14 293 aa11.52□□□□□ -0.57
VPS50-201ENST00000251739 PHOX2BQ99453 314 aa11.52□□□□□ -0.57
VPS50-201ENST00000251739 NAP1L4Q99733 375 aaKnown RBP11.52□□□□□ -0.57
VPS50-201ENST00000251739 PRRX2Q99811 253 aa11.52□□□□□ -0.57
VPS50-201ENST00000251739 RGL1Q9NZL6 768 aa11.52□□□□□ -0.57
VPS50-201ENST00000251739 INPP5FQ9Y2H2 1132 aa11.52□□□□□ -0.57
VPS50-201ENST00000251739 NR2E1Q9Y466 385 aa11.52□□□□□ -0.57
VPS50-201ENST00000251739 SMAPO00193 183 aa11.51□□□□□ -0.57
VPS50-201ENST00000251739 ZBTB39O15060 712 aa11.51□□□□□ -0.57
VPS50-201ENST00000251739 CCNT1O60563 726 aaKnown RBP11.51□□□□□ -0.57
VPS50-201ENST00000251739 DTNBO60941 627 aa11.51□□□□□ -0.57
VPS50-201ENST00000251739 DDHD2O94830 711 aa11.51□□□□□ -0.57
VPS50-201ENST00000251739 BRD1O95696 1058 aa11.51□□□□□ -0.57
VPS50-201ENST00000251739 PDGFBP01127 241 aaPredicted RBP11.51□□□□□ -0.57
VPS50-201ENST00000251739 NCLP19338 710 aaKnown RBP11.51□□□□□ -0.57
VPS50-201ENST00000251739 PTPN5P54829 565 aa11.51□□□□□ -0.57
VPS50-201ENST00000251739 ANAPC15P60006 121 aa11.51□□□□□ -0.57
VPS50-201ENST00000251739 DSC1Q08554 894 aa11.51□□□□□ -0.57
VPS50-201ENST00000251739 NR5A1Q13285 461 aa11.51□□□□□ -0.57
VPS50-201ENST00000251739 CES5AQ6NT32 575 aa11.51□□□□□ -0.57
VPS50-201ENST00000251739 FERMT3Q86UX7 667 aa11.51□□□□□ -0.57
VPS50-201ENST00000251739 RNF168Q8IYW5 571 aaPredicted RBP11.51□□□□□ -0.57
VPS50-201ENST00000251739 C12orf76Q8N812 135 aaPredicted RBP11.51□□□□□ -0.57
VPS50-201ENST00000251739 KREMEN2Q8NCW0 462 aa11.51□□□□□ -0.57
VPS50-201ENST00000251739 SMG8Q8ND04 991 aaKnown RBP11.51□□□□□ -0.57
VPS50-201ENST00000251739 PGBD4Q96DM1 585 aa11.51□□□□□ -0.57
VPS50-201ENST00000251739 DYDC2Q96IM9 177 aa11.51□□□□□ -0.57
VPS50-201ENST00000251739 SLKQ9H2G2 1235 aaPredicted RBP11.51□□□□□ -0.57
VPS50-201ENST00000251739 ZSWIM4Q9H7M6 989 aa11.51□□□□□ -0.57
VPS50-201ENST00000251739 RSAD1Q9HA92 442 aa11.51□□□□□ -0.57
VPS50-201ENST00000251739 SORCS3Q9UPU3 1222 aa11.51□□□□□ -0.57
VPS50-201ENST00000251739 USTQ9Y2C2 406 aa11.51□□□□□ -0.57
VPS50-201ENST00000251739 DOCK6Q96HP0 2047 aa11.51□□□□□ -0.57
VPS50-201ENST00000251739 WNT7AO00755 349 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms