RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Pop1Q8K205 1045 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Mmgt1Q8K273 131 aaKnown RBP16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Scrn2Q8VCA8 425 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Dync1i2O88487 612 aaKnown RBP16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Orc4O88708 433 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Nedd1P33215 660 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Nol4P60954 483 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 GmpsQ3THK7 693 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Fam81aQ3UXZ6 364 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Mcf2lQ64096 1149 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Ints2Q80UK8 1198 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 WhrnQ80VW5 918 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Ccdc68Q8BVC4 333 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Fsd1lQ8BYN5 507 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Gga1Q8R0H9 635 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Basp1Q91XV3 226 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Ube2sQ921J4 223 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Homer2Q9QWW1 354 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Rps6ka2Q9WUT3 733 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 B3galt4Q9Z0F0 371 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 PfasQ5SUR0 1337 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Scgb2b11A0A087WR49 112 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Gm382B1AXN3 1250 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Uhmk1P97343 419 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Celf4Q7TSY6 486 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 P3h4Q8K2B0 443 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Pls3Q99K51 630 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Tgm5Q9D7I9 724 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Ifnb1P01575 182 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Kdm7aQ3UWM4 940 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Atp13a3Q5XF89 1219 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Kiaa1841Q68FF0 718 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Slc25a38Q91XD8 326 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Rpa3Q9CQ71 121 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Chmp2aQ9DB34 222 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Uchl3Q9JKB1 230 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Serpina3iD3Z450 408 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Vamp7P70280 220 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Rit2P70425 217 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Kcnd1Q03719 651 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Mark2Q05512 776 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Lrrc55Q3UY51 311 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Spdye4aQ5IBH6 268 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 AmphQ7TQF7 686 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Rasal3Q8C2K5 1041 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Zcchc18Q8VD24 393 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 ArcQ9WV31 396 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Gm5114W4VSN8 858 aa16.55■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Gm5926E9PWJ8 236 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Fgl2P12804 432 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Eno1P17182 434 aaKnown RBP16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Ptk2P34152 1090 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Usp38Q8BW70 1042 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Tldc1Q8K0P3 455 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Pcdhgb4Q91XX6 912 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Lrrc63A6H694 637 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Tspyl5Q69ZB3 406 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Fam114a2Q8VE88 497 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Olfr397Q8VEZ6 315 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Rasgrp1Q9Z1S3 795 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Krt36B1AQ75 473 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Prl2c2P04095 224 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Cd72P21855 354 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Lilrb3P97484 841 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Samhd1Q60710 627 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Ppp2r2aQ6P1F6 447 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 N4bp3Q8C7U1 537 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Depdc1aQ8CIG0 804 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Prpsap2Q8R574 369 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Bhmt2Q91WS4 363 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Them5Q9CQJ0 248 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Kank3Q9Z1P7 791 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Cul9Q80TT8 1865 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Gbp6A0A0G2JDV3 611 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Gm43302L7N1X8 611 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Mpp3O88910 568 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Atg4cQ811C2 458 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Proser2Q8C5R2 471 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Mettl13Q91YR5 698 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Rtn3Q9ES97 964 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Gtf2ird1Q9JI57 1104 aaKnown RBP16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Aldh18a1Q9Z110 795 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 D430041D05RikF6ZGR6 1678 aa16.54■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Slc3a2P10852 526 aaKnown RBP16.53■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Rps6P62754 249 aaKnown RBP16.53■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 InhbaQ04998 424 aa16.53■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Serpinb6dQ3UWK8 375 aa16.53■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Ice2Q3UZ18 988 aaKnown RBP16.53■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Odr4Q4PJX1 447 aa16.53■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Ddx47Q9CWX9 455 aaKnown RBP16.53■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Slc16a2O70324 545 aa16.53■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Ica1lQ3TY65 431 aa16.53■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Ccdc33Q3ULW6 985 aa16.53■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 SugctQ7TNE1 436 aa16.53■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Gprc5cQ8K3J9 440 aa16.53■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Rabep2Q91WG2 554 aa16.53■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Pck1Q9Z2V4 622 aa16.53■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 YdjcQ14BV6 310 aa16.53■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Nuak1Q641K5 658 aa16.53■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 OtoaQ8K561 1137 aa16.53■□□□□ 0.24
Retrieved 100 of 22,080 RNA–protein pairs in 39.1 ms