RNA–Protein interactions for RNA: ENST00000641891.1

PHGDH-229, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,175 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-229ENST00000641891 SLFN11Q7Z7L1 901 aa18.39■□□□□ 0.53
PHGDH-229ENST00000641891 DAAM2Q86T65 1068 aa18.39■□□□□ 0.53
PHGDH-229ENST00000641891 POP1Q99575 1024 aaKnown RBP18.39■□□□□ 0.53
PHGDH-229ENST00000641891 ACBD3Q9H3P7 528 aa18.39■□□□□ 0.53
PHGDH-229ENST00000641891 JPH1Q9HDC5 661 aaPredicted RBP18.39■□□□□ 0.53
PHGDH-229ENST00000641891 KMT5AQ9NQR1 393 aa18.39■□□□□ 0.53
PHGDH-229ENST00000641891 TMOD4Q9NZQ9 345 aa18.39■□□□□ 0.53
PHGDH-229ENST00000641891 STXBP5LQ9Y2K9 1186 aa18.39■□□□□ 0.53
PHGDH-229ENST00000641891 NCANO14594 1321 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 CEP104O60308 925 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 AARSP49588 968 aaKnown RBP eCLIP18.38■□□□□ 0.53
PHGDH-229ENST00000641891 MXI1P50539 228 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 FAM193AP78312 1265 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 MAP2K1Q02750 393 aaPredicted RBP18.38■□□□□ 0.53
PHGDH-229ENST00000641891 FSTL1Q12841 308 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 SNRNP35Q16560 246 aaKnown RBP18.38■□□□□ 0.53
PHGDH-229ENST00000641891 HSP90B2PQ58FF3 399 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 MAP4K3Q8IVH8 894 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 METTL13Q8N6R0 699 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 SLC35G2Q8TBE7 412 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 FAM71BQ8TC56 605 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 RUBCNQ92622 972 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 ELMO3Q96BJ8 720 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 CCDC127Q96BQ5 260 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 TOPORSQ9NS56 1045 aaPredicted RBP18.38■□□□□ 0.53
PHGDH-229ENST00000641891 SEPT9Q9UHD8 586 aaPredicted RBP18.38■□□□□ 0.53
PHGDH-229ENST00000641891 AFG3L2Q9Y4W6 797 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 WDR90Q96KV7 1748 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 HEXIM1O94992 359 aaKnown RBP18.38■□□□□ 0.53
PHGDH-229ENST00000641891 TMEM253P0C7T8 217 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 CNGA1P29973 690 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 SMTNP53814 917 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 ACTR2P61160 394 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 PRKCEQ02156 737 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.38■□□□□ 0.53
PHGDH-229ENST00000641891 NT5DC3Q86UY8 548 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 KLHL7Q8IXQ5 586 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 SEMA4DQ92854 862 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 IWS1Q96ST2 819 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 AGPAT1Q99943 283 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 THAP2Q9H0W7 228 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 SLC9A2Q9UBY0 812 aa18.38■□□□□ 0.53
PHGDH-229ENST00000641891 BUB1BO60566 1050 aaPredicted RBP18.37■□□□□ 0.53
PHGDH-229ENST00000641891 PSAPP07602 524 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 RFX1P22670 979 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 GGCXP38435 758 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 SP2Q02086 613 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 GUCY2DQ02846 1103 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 CETN1Q12798 172 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 KCTD19Q17RG1 926 aaPredicted RBP18.37■□□□□ 0.53
PHGDH-229ENST00000641891 GLE1Q53GS7 698 aaKnown RBP18.37■□□□□ 0.53
PHGDH-229ENST00000641891 OTUD6AQ7L8S5 288 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 ATP6V0A1Q93050 837 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 XPNPEP1Q9NQW7 623 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 EXOC7Q9UPT5 735 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 AGPSO00116 658 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 CES2O00748 559 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 ATP2A1O14983 1001 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 MAPK13O15264 365 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 P4HA2O15460 535 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 MAFGO15525 162 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 CCDC172P0C7W6 258 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 USP8P40818 1118 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 CARSP49589 748 aaKnown RBP18.37■□□□□ 0.53
PHGDH-229ENST00000641891 ZNF526Q8TF50 670 aaPredicted RBP18.37■□□□□ 0.53
PHGDH-229ENST00000641891 CTNNBL1Q8WYA6 563 aaPredicted RBP18.37■□□□□ 0.53
PHGDH-229ENST00000641891 RFFLQ8WZ73 363 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 PBKQ96KB5 322 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 FAM84AQ96KN4 292 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 AP1M1Q9BXS5 423 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 EPB41L5Q9HCM4 733 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 MED4Q9NPJ6 270 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 TMEM59LQ9UK28 342 aa18.37■□□□□ 0.53
PHGDH-229ENST00000641891 RAD51CO43502 376 aa18.36■□□□□ 0.53
PHGDH-229ENST00000641891 RNF40O75150 1001 aa18.36■□□□□ 0.53
PHGDH-229ENST00000641891 SNRPFP62306 86 aaKnown RBP18.36■□□□□ 0.53
PHGDH-229ENST00000641891 CNTN2Q02246 1040 aa18.36■□□□□ 0.53
PHGDH-229ENST00000641891 TRADDQ15628 312 aa18.36■□□□□ 0.53
PHGDH-229ENST00000641891 ABHD15Q6UXT9 468 aa18.36■□□□□ 0.53
PHGDH-229ENST00000641891 TSEN2Q8NCE0 465 aaKnown RBP18.36■□□□□ 0.53
PHGDH-229ENST00000641891 PROCA1Q8NCQ7 364 aaPredicted RBP18.36■□□□□ 0.53
PHGDH-229ENST00000641891 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.36■□□□□ 0.532e-7■■□□□ 13.6
PHGDH-229ENST00000641891 LMBR1Q8WVP7 490 aa18.36■□□□□ 0.53
PHGDH-229ENST00000641891 CNKSR2Q8WXI2 1034 aa18.36■□□□□ 0.53
PHGDH-229ENST00000641891 KIFAP3Q92845 792 aa18.36■□□□□ 0.53
PHGDH-229ENST00000641891 KREMEN1Q96MU8 473 aa18.36■□□□□ 0.53
PHGDH-229ENST00000641891 ACP6Q9NPH0 428 aa18.36■□□□□ 0.53
PHGDH-229ENST00000641891 GDF3Q9NR23 364 aa18.36■□□□□ 0.53
PHGDH-229ENST00000641891 SUCLA2Q9P2R7 463 aaPredicted RBP18.36■□□□□ 0.53
PHGDH-229ENST00000641891 NOC2LQ9Y3T9 749 aaKnown RBP18.36■□□□□ 0.53
PHGDH-229ENST00000641891 NFASCO94856 1347 aa18.36■□□□□ 0.53
PHGDH-229ENST00000641891 SPATA31C2B4DYI2 1134 aa18.35■□□□□ 0.53
PHGDH-229ENST00000641891 TNFRSF8P28908 595 aa18.35■□□□□ 0.53
PHGDH-229ENST00000641891 EPHB4P54760 987 aa18.35■□□□□ 0.53
PHGDH-229ENST00000641891 NOL9Q5SY16 702 aaKnown RBP18.35■□□□□ 0.53
PHGDH-229ENST00000641891 TREML2Q5T2D2 321 aa18.35■□□□□ 0.53
PHGDH-229ENST00000641891 RPUSD2Q8IZ73 545 aaKnown RBP18.35■□□□□ 0.53
PHGDH-229ENST00000641891 SLC17A8Q8NDX2 589 aa18.35■□□□□ 0.53
PHGDH-229ENST00000641891 PDLIM7Q9NR12 457 aa18.35■□□□□ 0.53
PHGDH-229ENST00000641891 COG5Q9UP83 839 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms