RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 ARHGAP26Q9UNA1 814 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ATP11BQ9Y2G3 1177 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ZSCAN9O15535 394 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 CD2BP2O95400 341 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 KRT16P08779 473 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 AXLP30530 894 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 HSD17B3P37058 310 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 RNF144AP50876 292 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ATP1A2P50993 1020 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 FCGRTP55899 365 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 YWHAHQ04917 246 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 MTFR1Q15390 333 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 CNGA2Q16280 664 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PCSK9Q8NBP7 692 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 SLC26A7Q8TE54 656 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 SLC7A3Q8WY07 619 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 POMGNT1Q8WZA1 660 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PANX2Q96RD6 677 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 SIKE1Q9BRV8 207 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 YIPF3Q9GZM5 350 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 LACRTQ9GZZ8 138 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ING2Q9H160 280 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PI4KBQ9UBF8 816 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 DDX25Q9UHL0 483 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 RUVBL2Q9Y230 463 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 RSPH10B2B2RC85 870 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 GNPATO15228 680 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 GCATO75600 419 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 RSPH10BP0C881 870 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 CASRP41180 1078 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ADKP55263 362 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 NRG3P56975 720 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 RC3H1Q5TC82 1133 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 SLFN12LQ6IEE8 588 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 DCUN1D2Q6PH85 259 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ANO5Q75V66 913 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PLD3Q8IV08 490 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 TMEM169Q96HH4 297 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ABCG4Q9H172 646 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 RAD21L1Q9H4I0 556 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ZBTB40Q9NUA8 1239 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 FGFR1OP2Q9NVK5 253 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 IFNKQ9P0W0 207 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 WHRNQ9P202 907 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ABCC5O15440 1437 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 TIAM1Q13009 1591 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 SPOPO43791 374 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 TRIM16O95361 564 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 VARSP26640 1264 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 KIF23Q02241 960 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 CCDC184Q52MB2 194 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 KRT39Q6A163 491 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 SH3BP5LQ7L8J4 393 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PHC3Q8NDX5 983 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 GIPC2Q8TF65 315 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ABHD5Q8WTS1 349 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PPP1R14BQ96C90 147 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 MMS19Q96T76 1030 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 KCNN2Q9H2S1 579 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ABCF3Q9NUQ8 709 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PSD3Q9NYI0 1048 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PCDHB12Q9Y5F1 795 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 IL16Q14005 1332 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 N4BP1O75113 896 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 NDUFS2O75306 463 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 RTN3O95197 1032 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ARIH2O95376 493 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ECDO95905 644 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 RARBP10826 455 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ITGB6P18564 788 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ADD2P35612 726 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 BCAP31P51572 246 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 SELENOVP59797 346 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 RPP38P78345 283 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 TGM3Q08188 693 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 DEPDC1Q5TB30 811 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 MIS18BP1Q6P0N0 1132 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 FOXR1Q6PIV2 292 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 FAM47EQ6ZV65 393 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PAQR7Q86WK9 346 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PARP9Q8IXQ6 854 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 SLFN12Q8IYM2 578 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ANKRD42Q8N9B4 389 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 FBXL13Q8NEE6 735 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 S100A13Q99584 98 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PRRG4Q9BZD6 226 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 QTRT2Q9H974 415 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 FRMD4AQ9P2Q2 1039 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 CTNND2Q9UQB3 1225 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 EFR3BQ9Y2G0 817 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 LDOC1O95751 146 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ITIH2P19823 946 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 MORC3Q14149 939 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 POLA2Q14181 598 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 PDIA6Q15084 440 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 GRAMD1BQ3KR37 738 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 CCDC157Q569K6 752 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 UNC5CLQ8IV45 518 aa2.95□□□□□ -1.94
SCN1A-219ENST00000641575 GEMIN8Q9NWZ8 242 aaKnown RBP2.95□□□□□ -1.94
SCN1A-219ENST00000641575 ASIC3Q9UHC3 531 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms