RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 MSL3Q8N5Y2 521 aaKnown RBP6.1□□□□□ -1.43
CD44-239ENST00000639002 MB21D1Q8N884 522 aa6.1□□□□□ -1.43
CD44-239ENST00000639002 CDYL2Q8N8U2 506 aa6.1□□□□□ -1.43
CD44-239ENST00000639002 PGBD4Q96DM1 585 aa6.1□□□□□ -1.43
CD44-239ENST00000639002 MFSD3Q96ES6 412 aa6.1□□□□□ -1.43
CD44-239ENST00000639002 PPP2R3BQ9Y5P8 575 aa6.1□□□□□ -1.43
CD44-239ENST00000639002 A0A1W2PR48 441 aa6.09□□□□□ -1.43
CD44-239ENST00000639002 FAM20BO75063 409 aa6.09□□□□□ -1.43
CD44-239ENST00000639002 MFAP3LO75121 409 aa6.09□□□□□ -1.43
CD44-239ENST00000639002 RPS6KA4O75676 772 aa6.09□□□□□ -1.43
CD44-239ENST00000639002 NR4A1P22736 598 aa6.09□□□□□ -1.43
CD44-239ENST00000639002 LSP1P33241 339 aa6.09□□□□□ -1.43
CD44-239ENST00000639002 CASRP41180 1078 aa6.09□□□□□ -1.43
CD44-239ENST00000639002 MANFP55145 182 aaKnown RBP6.09□□□□□ -1.43
CD44-239ENST00000639002 RABL3Q5HYI8 236 aa6.09□□□□□ -1.43
CD44-239ENST00000639002 TAS1R1Q7RTX1 841 aa6.09□□□□□ -1.43
CD44-239ENST00000639002 ULK2Q8IYT8 1036 aa6.09□□□□□ -1.43
CD44-239ENST00000639002 GAB3Q8WWW8 586 aa6.09□□□□□ -1.43
CD44-239ENST00000639002 ST8SIA2Q92186 375 aa6.09□□□□□ -1.43
CD44-239ENST00000639002 ARL8AQ96BM9 186 aa6.09□□□□□ -1.43
CD44-239ENST00000639002 CEP89Q96ST8 783 aa6.09□□□□□ -1.43
CD44-239ENST00000639002 ANO3Q9BYT9 981 aa6.09□□□□□ -1.43
CD44-239ENST00000639002 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.09□□□□□ -1.43
CD44-239ENST00000639002 EMC7Q9NPA0 242 aa6.09□□□□□ -1.43
CD44-239ENST00000639002 PLAAQ9Y263 795 aa6.09□□□□□ -1.43
CD44-239ENST00000639002 REXO2Q9Y3B8 237 aaKnown RBP6.09□□□□□ -1.43
CD44-239ENST00000639002 NUMBLQ9Y6R0 609 aa6.09□□□□□ -1.43
CD44-239ENST00000639002 ADH4P08319 380 aa6.08□□□□□ -1.44
CD44-239ENST00000639002 TRIM25Q14258 630 aaKnown RBP6.08□□□□□ -1.44
CD44-239ENST00000639002 BROXQ5VW32 411 aa6.08□□□□□ -1.44
CD44-239ENST00000639002 APBB1IPQ7Z5R6 666 aaPredicted RBP6.08□□□□□ -1.44
CD44-239ENST00000639002 MRGPREQ86SM8 312 aa6.08□□□□□ -1.44
CD44-239ENST00000639002 FERMT2Q96AC1 680 aa6.08□□□□□ -1.44
CD44-239ENST00000639002 LSM14BQ9BX40 385 aaKnown RBP6.08□□□□□ -1.44
CD44-239ENST00000639002 EVLQ9UI08 416 aaPredicted RBP6.08□□□□□ -1.44
CD44-239ENST00000639002 CLEC2LP0C7M8 214 aa6.07□□□□□ -1.44
CD44-239ENST00000639002 HK1P19367 917 aa6.07□□□□□ -1.44
CD44-239ENST00000639002 ZFP36P26651 326 aaKnown RBP6.07□□□□□ -1.44
CD44-239ENST00000639002 IL2P60568 153 aa6.07□□□□□ -1.44
CD44-239ENST00000639002 MRPL49Q13405 166 aaKnown RBP6.07□□□□□ -1.44
CD44-239ENST00000639002 ZNF662Q6ZS27 426 aa6.07□□□□□ -1.44
CD44-239ENST00000639002 RHOUQ7L0Q8 258 aa6.07□□□□□ -1.44
CD44-239ENST00000639002 OR2W6PQ8NHA6 318 aa6.07□□□□□ -1.44
CD44-239ENST00000639002 CPEB1Q9BZB8 566 aaKnown RBP6.07□□□□□ -1.44
CD44-239ENST00000639002 PRSS50Q9UI38 385 aa6.07□□□□□ -1.44
CD44-239ENST00000639002 WDR33Q9C0J8 1336 aaKnown RBP6.06□□□□□ -1.44
CD44-239ENST00000639002 GOLGA6L6A8MZA4 724 aa6.06□□□□□ -1.44
CD44-239ENST00000639002 ENPP3O14638 875 aa6.06□□□□□ -1.44
CD44-239ENST00000639002 IPO13O94829 963 aaKnown RBP6.06□□□□□ -1.44
CD44-239ENST00000639002 GPR15P49685 360 aa6.06□□□□□ -1.44
CD44-239ENST00000639002 INHBCP55103 352 aa6.06□□□□□ -1.44
CD44-239ENST00000639002 OCRLQ01968 901 aa6.06□□□□□ -1.44
CD44-239ENST00000639002 MGAT5Q09328 741 aa6.06□□□□□ -1.44
CD44-239ENST00000639002 SART3Q15020 963 aaKnown RBP6.06□□□□□ -1.44
CD44-239ENST00000639002 PDCD1Q15116 288 aa6.06□□□□□ -1.44
CD44-239ENST00000639002 UBE3CQ15386 1083 aa6.06□□□□□ -1.44
CD44-239ENST00000639002 CSRP2Q16527 193 aa6.06□□□□□ -1.44
CD44-239ENST00000639002 FRMD7Q6ZUT3 714 aa6.06□□□□□ -1.44
CD44-239ENST00000639002 RPUSD2Q8IZ73 545 aaKnown RBP6.06□□□□□ -1.44
CD44-239ENST00000639002 LEO1Q8WVC0 666 aaPredicted RBP6.06□□□□□ -1.44
CD44-239ENST00000639002 A0A087X1B8 175 aa6.05□□□□□ -1.44
CD44-239ENST00000639002 ST20-MTHFSA0A0A6YYL1 179 aa6.05□□□□□ -1.44
CD44-239ENST00000639002 PDE8AO60658 829 aa6.05□□□□□ -1.44
CD44-239ENST00000639002 BPIP17213 487 aa6.05□□□□□ -1.44
CD44-239ENST00000639002 GNAT2P19087 354 aa6.05□□□□□ -1.44
CD44-239ENST00000639002 KRTAP15-1Q3LI76 137 aa6.05□□□□□ -1.44
CD44-239ENST00000639002 CCDC178Q5BJE1 867 aa6.05□□□□□ -1.44
CD44-239ENST00000639002 DCAF17Q5H9S7 520 aaPredicted RBP6.05□□□□□ -1.44
CD44-239ENST00000639002 PITRM1Q5JRX3 1037 aa6.05□□□□□ -1.44
CD44-239ENST00000639002 LILRA3Q8N6C8 439 aaPredicted RBP6.05□□□□□ -1.44
CD44-239ENST00000639002 OR52N2Q8NGI0 321 aa6.05□□□□□ -1.44
CD44-239ENST00000639002 OR5M3Q8NGP4 307 aa6.05□□□□□ -1.44
CD44-239ENST00000639002 SLC25A43Q8WUT9 341 aaPredicted RBP6.05□□□□□ -1.44
CD44-239ENST00000639002 SLC5A5Q92911 643 aa6.05□□□□□ -1.44
CD44-239ENST00000639002 AGAP2Q99490 1192 aa6.05□□□□□ -1.44
CD44-239ENST00000639002 NRDE2Q9H7Z3 1164 aa6.05□□□□□ -1.44
CD44-239ENST00000639002 TBX22Q9Y458 520 aa6.05□□□□□ -1.44
CD44-239ENST00000639002 NRP1O14786 923 aa6.04□□□□□ -1.44
CD44-239ENST00000639002 KDM1AO60341 852 aa6.04□□□□□ -1.44
CD44-239ENST00000639002 MYCLP1P12525 358 aaPredicted RBP6.04□□□□□ -1.44
CD44-239ENST00000639002 ID4P47928 161 aa6.04□□□□□ -1.44
CD44-239ENST00000639002 PURAQ00577 322 aaKnown RBP6.04□□□□□ -1.44
CD44-239ENST00000639002 COL10A1Q03692 680 aa6.04□□□□□ -1.44
CD44-239ENST00000639002 PPARAQ07869 468 aa6.04□□□□□ -1.44
CD44-239ENST00000639002 DDB1Q16531 1140 aa6.04□□□□□ -1.44
CD44-239ENST00000639002 PLEKHG4Q58EX7 1191 aa6.04□□□□□ -1.44
CD44-239ENST00000639002 ABHD15Q6UXT9 468 aa6.04□□□□□ -1.44
CD44-239ENST00000639002 RASSF3Q86WH2 238 aa6.04□□□□□ -1.44
CD44-239ENST00000639002 ZNF276Q8N554 614 aa6.04□□□□□ -1.44
CD44-239ENST00000639002 LENG9Q96B70 501 aa6.04□□□□□ -1.44
CD44-239ENST00000639002 CPPED1Q9BRF8 314 aaPredicted RBP6.04□□□□□ -1.44
CD44-239ENST00000639002 PDCD2LQ9BRP1 358 aa6.04□□□□□ -1.44
CD44-239ENST00000639002 ZNF768Q9H5H4 540 aaKnown RBP6.04□□□□□ -1.44
CD44-239ENST00000639002 C11orf21Q9P2W6 132 aa6.04□□□□□ -1.44
CD44-239ENST00000639002 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.04□□□□□ -1.44
CD44-239ENST00000639002 SORCS3Q9UPU3 1222 aa6.04□□□□□ -1.44
CD44-239ENST00000639002 AHRRA9YTQ3 701 aa6.03□□□□□ -1.44
CD44-239ENST00000639002 NEMP1O14524 444 aa6.03□□□□□ -1.44
CD44-239ENST00000639002 DNAJC6O75061 913 aa6.03□□□□□ -1.44
CD44-239ENST00000639002 TMEM127O75204 238 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms