RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 CNNM3Q8NE01 707 aa21.32■■□□□ 1
CLN3-260ENST00000637578 SNX29Q8TEQ0 813 aa21.32■■□□□ 1
CLN3-260ENST00000637578 MRPS27Q92552 414 aaKnown RBP21.32■■□□□ 1
CLN3-260ENST00000637578 TLR9Q9NR96 1032 aa21.32■■□□□ 1
CLN3-260ENST00000637578 DDX19AQ9NUU7 478 aaKnown RBP21.32■■□□□ 1
CLN3-260ENST00000637578 SPG21Q9NZD8 308 aa21.32■■□□□ 1
CLN3-260ENST00000637578 PLXNA4Q9HCM2 1894 aa21.32■■□□□ 1
CLN3-260ENST00000637578 PP2D1A8MPX8 630 aa21.31■■□□□ 1
CLN3-260ENST00000637578 ARF4P18085 180 aaPredicted RBP21.31■■□□□ 1
CLN3-260ENST00000637578 GTF2F1P35269 517 aaKnown RBP eCLIP21.31■■□□□ 1
CLN3-260ENST00000637578 ADAM15Q13444 863 aa21.31■■□□□ 1
CLN3-260ENST00000637578 LONRF3Q496Y0 759 aa21.31■■□□□ 1
CLN3-260ENST00000637578 KRT79Q5XKE5 535 aa21.31■■□□□ 1
CLN3-260ENST00000637578 ADGRD2Q7Z7M1 963 aa21.31■■□□□ 1
CLN3-260ENST00000637578 SLC39A11Q8N1S5 342 aa21.31■■□□□ 1
CLN3-260ENST00000637578 BSNDQ8WZ55 320 aa21.31■■□□□ 1
CLN3-260ENST00000637578 PPP2R3CQ969Q6 453 aa21.31■■□□□ 1
CLN3-260ENST00000637578 CSRNP2Q9H175 543 aa21.31■■□□□ 1
CLN3-260ENST00000637578 BHMT2Q9H2M3 363 aa21.31■■□□□ 1
CLN3-260ENST00000637578 TBC1D13Q9NVG8 400 aa21.31■■□□□ 1
CLN3-260ENST00000637578 CNTNAP2Q9UHC6 1331 aa21.31■■□□□ 1
CLN3-260ENST00000637578 A0A1B0GUA9 196 aa21.31■■□□□ 1
CLN3-260ENST00000637578 TNFRSF10AO00220 468 aa21.31■■□□□ 1
CLN3-260ENST00000637578 CDC25AP30304 524 aa21.31■■□□□ 1
CLN3-260ENST00000637578 PBX3P40426 434 aa21.31■■□□□ 1
CLN3-260ENST00000637578 BCAR1P56945 870 aa21.31■■□□□ 1
CLN3-260ENST00000637578 NCBP1Q09161 790 aaKnown RBP21.31■■□□□ 1
CLN3-260ENST00000637578 FAM187BQ17R55 369 aa21.31■■□□□ 1
CLN3-260ENST00000637578 PUS10Q3MIT2 529 aaKnown RBP21.31■■□□□ 1
CLN3-260ENST00000637578 PPP4R3CPQ6ZMV5 832 aa21.31■■□□□ 1
CLN3-260ENST00000637578 BRAPQ7Z569 592 aa21.31■■□□□ 1
CLN3-260ENST00000637578 EIF2AQ9BY44 585 aaKnown RBP21.31■■□□□ 1
CLN3-260ENST00000637578 FZD8Q9H461 694 aa21.31■■□□□ 1
CLN3-260ENST00000637578 CLDND1Q9NY35 253 aa21.31■■□□□ 1
CLN3-260ENST00000637578 PCDHGC5Q9Y5F6 944 aa21.31■■□□□ 1
CLN3-260ENST00000637578 NCOR1O75376 2440 aa21.3■■□□□ 1
CLN3-260ENST00000637578 CARNS1A5YM72 827 aa21.3■■□□□ 1
CLN3-260ENST00000637578 INPPL1O15357 1258 aa21.3■■□□□ 1
CLN3-260ENST00000637578 STX6O43752 255 aa21.3■■□□□ 1
CLN3-260ENST00000637578 EYA4O95677 639 aa21.3■■□□□ 1
CLN3-260ENST00000637578 ALDH7A1P49419 539 aaKnown RBP21.3■■□□□ 1
CLN3-260ENST00000637578 HYIQ5T013 277 aa21.3■■□□□ 1
CLN3-260ENST00000637578 KCTD17Q8N5Z5 321 aa21.3■■□□□ 1
CLN3-260ENST00000637578 EFHBQ8N7U6 833 aa21.3■■□□□ 1
CLN3-260ENST00000637578 CPB2Q96IY4 423 aa21.3■■□□□ 1
CLN3-260ENST00000637578 PRIMPOLQ96LW4 560 aa21.3■■□□□ 1
CLN3-260ENST00000637578 NECAB3Q96P71 396 aaPredicted RBP21.3■■□□□ 1
CLN3-260ENST00000637578 NRDE2Q9H7Z3 1164 aa21.3■■□□□ 1
CLN3-260ENST00000637578 RSAD1Q9HA92 442 aa21.3■■□□□ 1
CLN3-260ENST00000637578 UBN1Q9NPG3 1134 aa21.3■■□□□ 1
CLN3-260ENST00000637578 PUF60Q9UHX1 559 aaKnown RBP21.3■■□□□ 1
CLN3-260ENST00000637578 DNM3Q9UQ16 869 aa21.3■■□□□ 1
CLN3-260ENST00000637578 IPPQ9Y573 584 aa21.3■■□□□ 1
CLN3-260ENST00000637578 TCF20Q9UGU0 1960 aaKnown RBP21.3■■□□□ 1
CLN3-260ENST00000637578 GRXCR2A6NFK2 248 aa21.29■■□□□ 1
CLN3-260ENST00000637578 LRRIQ4A6NIV6 560 aa21.29■■□□□ 1
CLN3-260ENST00000637578 H3BQ06 376 aaPredicted RBP21.29■■□□□ 1
CLN3-260ENST00000637578 B4GALT5O43286 388 aa21.29■■□□□ 1
CLN3-260ENST00000637578 CSPG5O95196 566 aa21.29■■□□□ 1
CLN3-260ENST00000637578 NAMPTP43490 491 aa21.29■■□□□ 1
CLN3-260ENST00000637578 AFF1P51825 1210 aaKnown RBP21.29■■□□□ 1
CLN3-260ENST00000637578 KRT17Q04695 432 aa21.29■■□□□ 1
CLN3-260ENST00000637578 DLX2Q07687 328 aaPredicted RBP21.29■■□□□ 1
CLN3-260ENST00000637578 PRMT7Q9NVM4 692 aaPredicted RBP21.29■■□□□ 1
CLN3-260ENST00000637578 KANSL3Q9P2N6 904 aa21.29■■□□□ 1
CLN3-260ENST00000637578 MTMR6Q9Y217 621 aa21.29■■□□□ 1
CLN3-260ENST00000637578 RBM19Q9Y4C8 960 aaKnown RBP21.29■■□□□ 1
CLN3-260ENST00000637578 E9PMD0 336 aa21.28■■□□□ 1
CLN3-260ENST00000637578 LINC01565O15544 149 aa21.28■■□□□ 1
CLN3-260ENST00000637578 PTCRAQ6ISU1 281 aaPredicted RBP21.28■■□□□ 1
CLN3-260ENST00000637578 MICAL1Q8TDZ2 1067 aa21.28■■□□□ 1
CLN3-260ENST00000637578 CCDC113Q9H0I3 377 aa21.28■■□□□ 1
CLN3-260ENST00000637578 C2orf40Q9H1Z8 148 aa21.28■■□□□ 1
CLN3-260ENST00000637578 RNF39Q9H2S5 420 aa21.28■■□□□ 1
CLN3-260ENST00000637578 IGFLR1Q9H665 355 aa21.28■■□□□ 1
CLN3-260ENST00000637578 INPP5FQ9Y2H2 1132 aa21.28■■□□□ 1
CLN3-260ENST00000637578 TBX10O75333 385 aa21.27■■□□□ 1
CLN3-260ENST00000637578 GALTP07902 379 aa21.27■■□□□ 1
CLN3-260ENST00000637578 NRIP1P48552 1158 aa21.27■■□□□ 1
CLN3-260ENST00000637578 PPP2R5AQ15172 486 aa21.27■■□□□ 1
CLN3-260ENST00000637578 SLC27A1Q6PCB7 646 aa21.27■■□□□ 1
CLN3-260ENST00000637578 KCNK18Q7Z418 384 aa21.27■■□□□ 1
CLN3-260ENST00000637578 ZNF280BQ86YH2 543 aa21.27■■□□□ 1
CLN3-260ENST00000637578 KIFAP3Q92845 792 aa21.27■■□□□ 1
CLN3-260ENST00000637578 NGRNQ9NPE2 291 aaKnown RBP21.27■■□□□ 1
CLN3-260ENST00000637578 VWA3AA6NCI4 1184 aa21.27■□□□□ 0.99
CLN3-260ENST00000637578 B4GALT3O60512 393 aa21.27■□□□□ 0.99
CLN3-260ENST00000637578 ZC3H11AO75152 810 aaKnown RBP eCLIP21.27■□□□□ 0.99
CLN3-260ENST00000637578 ITGA4P13612 1032 aa21.27■□□□□ 0.99
CLN3-260ENST00000637578 ZBTB8OSQ8IWT0 167 aa21.27■□□□□ 0.99
CLN3-260ENST00000637578 URGCPQ8TCY9 931 aa21.27■□□□□ 0.99
CLN3-260ENST00000637578 PNMA5Q96PV4 448 aa21.27■□□□□ 0.99
CLN3-260ENST00000637578 CDCA3Q99618 268 aaPredicted RBP21.27■□□□□ 0.99
CLN3-260ENST00000637578 TCF25Q9BQ70 676 aa21.27■□□□□ 0.99
CLN3-260ENST00000637578 TLE6Q9H808 572 aa21.27■□□□□ 0.99
CLN3-260ENST00000637578 NT5C1B-RDH14C9J2C7 533 aa21.26■□□□□ 0.99
CLN3-260ENST00000637578 DDHD2O94830 711 aa21.26■□□□□ 0.99
CLN3-260ENST00000637578 RNASELQ05823 741 aaKnown RBP21.26■□□□□ 0.99
CLN3-260ENST00000637578 PKP1Q13835 747 aa21.26■□□□□ 0.99
CLN3-260ENST00000637578 KCNC3Q14003 757 aa21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms