RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 TFDP1Q14186 410 aa12.93□□□□□ -0.34
CLN3-257ENST00000637110 LONRF3Q496Y0 759 aa12.93□□□□□ -0.34
CLN3-257ENST00000637110 MAEAQ7L5Y9 396 aa12.93□□□□□ -0.34
CLN3-257ENST00000637110 FRMD5Q7Z6J6 570 aa12.93□□□□□ -0.34
CLN3-257ENST00000637110 ADGRD2Q7Z7M1 963 aa12.93□□□□□ -0.34
CLN3-257ENST00000637110 THNSL1Q8IYQ7 743 aa12.93□□□□□ -0.34
CLN3-257ENST00000637110 CRIPAKQ8N1N5 446 aa12.93□□□□□ -0.34
CLN3-257ENST00000637110 KLHL23Q8NBE8 558 aa12.93□□□□□ -0.34
CLN3-257ENST00000637110 RNF149Q8NC42 400 aa12.93□□□□□ -0.34
CLN3-257ENST00000637110 MICAL1Q8TDZ2 1067 aa12.93□□□□□ -0.34
CLN3-257ENST00000637110 TUFT1Q9NNX1 390 aa12.93□□□□□ -0.34
CLN3-257ENST00000637110 CHST12Q9NRB3 414 aa12.93□□□□□ -0.34
CLN3-257ENST00000637110 TYW1Q9NV66 732 aaKnown RBP12.93□□□□□ -0.34
CLN3-257ENST00000637110 USO1O60763 962 aaKnown RBP12.92□□□□□ -0.34
CLN3-257ENST00000637110 MED24O75448 989 aa12.92□□□□□ -0.34
CLN3-257ENST00000637110 DGAT1O75907 488 aa12.92□□□□□ -0.34
CLN3-257ENST00000637110 ERLIN2O94905 339 aa12.92□□□□□ -0.34
CLN3-257ENST00000637110 LYPLA2O95372 231 aa12.92□□□□□ -0.34
CLN3-257ENST00000637110 GLP2RO95838 553 aa12.92□□□□□ -0.34
CLN3-257ENST00000637110 PDGFBP01127 241 aaPredicted RBP12.92□□□□□ -0.34
CLN3-257ENST00000637110 SKIP12755 728 aa12.92□□□□□ -0.34
CLN3-257ENST00000637110 U2AF2P26368 475 aaKnown RBP eCLIP12.92□□□□□ -0.34
CLN3-257ENST00000637110 CCT6AP40227 531 aaKnown RBP12.92□□□□□ -0.34
CLN3-257ENST00000637110 PHKA2P46019 1235 aa12.92□□□□□ -0.34
CLN3-257ENST00000637110 NCBP1Q09161 790 aaKnown RBP12.92□□□□□ -0.34
CLN3-257ENST00000637110 PTGDRQ13258 359 aa12.92□□□□□ -0.34
CLN3-257ENST00000637110 MXD4Q14582 209 aaPredicted RBP12.92□□□□□ -0.34
CLN3-257ENST00000637110 HAUS3Q68CZ6 603 aa12.92□□□□□ -0.34
CLN3-257ENST00000637110 DGLUCYQ7Z3D6 616 aa12.92□□□□□ -0.34
CLN3-257ENST00000637110 SRGAP1Q7Z6B7 1085 aa12.92□□□□□ -0.34
CLN3-257ENST00000637110 RBM23Q86U06 439 aaKnown RBP12.92□□□□□ -0.34
CLN3-257ENST00000637110 FERMT3Q86UX7 667 aa12.92□□□□□ -0.34
CLN3-257ENST00000637110 CATSPER3Q86XQ3 398 aa12.92□□□□□ -0.34
CLN3-257ENST00000637110 SPPL3Q8TCT6 385 aa12.92□□□□□ -0.34
CLN3-257ENST00000637110 SUSD6Q92537 303 aa12.92□□□□□ -0.34
CLN3-257ENST00000637110 NACC1Q96RE7 527 aa12.92□□□□□ -0.34
CLN3-257ENST00000637110 CDCA3Q99618 268 aaPredicted RBP12.92□□□□□ -0.34
CLN3-257ENST00000637110 RAB34Q9BZG1 259 aa12.92□□□□□ -0.34
CLN3-257ENST00000637110 TMEM117Q9H0C3 514 aa12.92□□□□□ -0.34
CLN3-257ENST00000637110 TLE6Q9H808 572 aa12.92□□□□□ -0.34
CLN3-257ENST00000637110 LRWD1Q9UFC0 647 aa12.92□□□□□ -0.34
CLN3-257ENST00000637110 PCDHB6Q9Y5E3 794 aa12.92□□□□□ -0.34
CLN3-257ENST00000637110 KIAA1671Q9BY89 1806 aa12.92□□□□□ -0.34
CLN3-257ENST00000637110 A0A0U1RQF3 1178 aa12.91□□□□□ -0.34
CLN3-257ENST00000637110 ARHGEF35A5YM69 484 aa12.91□□□□□ -0.34
CLN3-257ENST00000637110 INO80B-WBP1J3KQ70 363 aa12.91□□□□□ -0.34
CLN3-257ENST00000637110 EOMESO95936 686 aa12.91□□□□□ -0.34
CLN3-257ENST00000637110 ITGB1P05556 798 aa12.91□□□□□ -0.34
CLN3-257ENST00000637110 SPATA31C1P0DKV0 1188 aa12.91□□□□□ -0.34
CLN3-257ENST00000637110 XRCC6P12956 609 aaKnown RBP eCLIP12.91□□□□□ -0.34
CLN3-257ENST00000637110 LAG3P18627 525 aa12.91□□□□□ -0.34
CLN3-257ENST00000637110 DNAJB1P25685 340 aa12.91□□□□□ -0.34
CLN3-257ENST00000637110 RARRES1P49788 294 aa12.91□□□□□ -0.34
CLN3-257ENST00000637110 LARP1BQ659C4 914 aaKnown RBP12.91□□□□□ -0.34
CLN3-257ENST00000637110 LRRC43Q8N309 656 aa12.91□□□□□ -0.34
CLN3-257ENST00000637110 TMEM105Q8N8V8 129 aa12.91□□□□□ -0.34
CLN3-257ENST00000637110 KREMEN2Q8NCW0 462 aa12.91□□□□□ -0.34
CLN3-257ENST00000637110 HELQQ8TDG4 1101 aa12.91□□□□□ -0.34
CLN3-257ENST00000637110 POF1BQ8WVV4 589 aa12.91□□□□□ -0.34
CLN3-257ENST00000637110 POLR3CQ9BUI4 534 aaPredicted RBP12.91□□□□□ -0.34
CLN3-257ENST00000637110 POLR3FQ9H1D9 316 aaPredicted RBP12.91□□□□□ -0.34
CLN3-257ENST00000637110 IFT122Q9HBG6 1241 aa12.91□□□□□ -0.34
CLN3-257ENST00000637110 NR2E1Q9Y466 385 aa12.91□□□□□ -0.34
CLN3-257ENST00000637110 EPG5Q9HCE0 2579 aa12.9□□□□□ -0.34
CLN3-257ENST00000637110 MED19A0JLT2 244 aaPredicted RBP12.9□□□□□ -0.34
CLN3-257ENST00000637110 TOB1P50616 345 aaPredicted RBP12.9□□□□□ -0.34
CLN3-257ENST00000637110 ZRSR1Q15695 479 aaKnown RBP12.9□□□□□ -0.34
CLN3-257ENST00000637110 TMEM132AQ24JP5 1023 aa12.9□□□□□ -0.34
CLN3-257ENST00000637110 RILPL1Q5EBL4 403 aa12.9□□□□□ -0.34
CLN3-257ENST00000637110 ASTLQ6HA08 431 aaPredicted RBP12.9□□□□□ -0.34
CLN3-257ENST00000637110 POTEGQ6S5H5 508 aa12.9□□□□□ -0.34
CLN3-257ENST00000637110 DTHD1Q6ZMT9 781 aa12.9□□□□□ -0.34
CLN3-257ENST00000637110 COLGALT1Q8NBJ5 622 aa12.9□□□□□ -0.34
CLN3-257ENST00000637110 LPPQ93052 612 aa12.9□□□□□ -0.34
CLN3-257ENST00000637110 PGBD4Q96DM1 585 aa12.9□□□□□ -0.34
CLN3-257ENST00000637110 CASD1Q96PB1 797 aa12.9□□□□□ -0.34
CLN3-257ENST00000637110 BACH2Q9BYV9 841 aa12.9□□□□□ -0.34
CLN3-257ENST00000637110 MFSD1Q9H3U5 465 aa12.9□□□□□ -0.34
CLN3-257ENST00000637110 XPNPEP1Q9NQW7 623 aa12.9□□□□□ -0.34
CLN3-257ENST00000637110 AGPAT5Q9NUQ2 364 aa12.9□□□□□ -0.34
CLN3-257ENST00000637110 FAM105AQ9NUU6 356 aa12.9□□□□□ -0.34
CLN3-257ENST00000637110 HCSTQ9UBK5 93 aa12.9□□□□□ -0.34
CLN3-257ENST00000637110 PUF60Q9UHX1 559 aaKnown RBP12.9□□□□□ -0.34
CLN3-257ENST00000637110 SORCS3Q9UPU3 1222 aa12.9□□□□□ -0.34
CLN3-257ENST00000637110 INPP5FQ9Y2H2 1132 aa12.9□□□□□ -0.34
CLN3-257ENST00000637110 STK24Q9Y6E0 443 aa12.9□□□□□ -0.34
CLN3-257ENST00000637110 MYO10Q9HD67 2058 aa12.9□□□□□ -0.34
CLN3-257ENST00000637110 LRRIQ4A6NIV6 560 aa12.89□□□□□ -0.35
CLN3-257ENST00000637110 FGF18O76093 207 aa12.89□□□□□ -0.35
CLN3-257ENST00000637110 RPA1P27694 616 aa12.89□□□□□ -0.35
CLN3-257ENST00000637110 FXR2P51116 673 aaKnown RBP eCLIP12.89□□□□□ -0.35
CLN3-257ENST00000637110 RAB27AP51159 221 aa12.89□□□□□ -0.35
CLN3-257ENST00000637110 UBE3AQ05086 875 aa12.89□□□□□ -0.35
CLN3-257ENST00000637110 RNASELQ05823 741 aaKnown RBP12.89□□□□□ -0.35
CLN3-257ENST00000637110 CLLU1OSQ5K130 101 aa12.89□□□□□ -0.35
CLN3-257ENST00000637110 KRT79Q5XKE5 535 aa12.89□□□□□ -0.35
CLN3-257ENST00000637110 PADI6Q6TGC4 694 aa12.89□□□□□ -0.35
CLN3-257ENST00000637110 GLB1LQ6UWU2 654 aa12.89□□□□□ -0.35
CLN3-257ENST00000637110 C4orf32Q8N8J7 132 aa12.89□□□□□ -0.35
CLN3-257ENST00000637110 MCPH1Q8NEM0 835 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms