RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 PGBD4Q96DM1 585 aa22.85■■□□□ 1.25
CLN3-240ENST00000631023 C17orf80Q9BSJ5 609 aa22.85■■□□□ 1.25
CLN3-240ENST00000631023 TMEM117Q9H0C3 514 aa22.85■■□□□ 1.25
CLN3-240ENST00000631023 RCOR1Q9UKL0 485 aa22.85■■□□□ 1.25
CLN3-240ENST00000631023 ODF2LQ9ULJ1 636 aa22.85■■□□□ 1.25
CLN3-240ENST00000631023 RBM19Q9Y4C8 960 aaKnown RBP22.85■■□□□ 1.25
CLN3-240ENST00000631023 PHLPP2Q6ZVD8 1323 aa22.85■■□□□ 1.25
CLN3-240ENST00000631023 SFI1A8K8P3 1242 aa22.84■■□□□ 1.25
CLN3-240ENST00000631023 K7ERI5 159 aa22.84■■□□□ 1.25
CLN3-240ENST00000631023 NCLP19338 710 aaKnown RBP22.84■■□□□ 1.25
CLN3-240ENST00000631023 STAT6P42226 847 aa22.84■■□□□ 1.25
CLN3-240ENST00000631023 NPTX2P47972 431 aa22.84■■□□□ 1.25
CLN3-240ENST00000631023 GATMP50440 423 aa22.84■■□□□ 1.25
CLN3-240ENST00000631023 SMTNP53814 917 aa22.84■■□□□ 1.25
CLN3-240ENST00000631023 TMEM132AQ24JP5 1023 aa22.84■■□□□ 1.25
CLN3-240ENST00000631023 EPC2Q52LR7 807 aa22.84■■□□□ 1.25
CLN3-240ENST00000631023 ARSHQ5FYA8 562 aa22.84■■□□□ 1.25
CLN3-240ENST00000631023 SPRED2Q7Z698 418 aa22.84■■□□□ 1.25
CLN3-240ENST00000631023 CNNM3Q8NE01 707 aa22.84■■□□□ 1.25
CLN3-240ENST00000631023 FBXO22Q8NEZ5 403 aa22.84■■□□□ 1.25
CLN3-240ENST00000631023 RSPH1Q8WYR4 309 aa22.84■■□□□ 1.25
CLN3-240ENST00000631023 CPB2Q96IY4 423 aa22.84■■□□□ 1.25
CLN3-240ENST00000631023 KMT5AQ9NQR1 393 aa22.84■■□□□ 1.25
CLN3-240ENST00000631023 LARSQ9P2J5 1176 aaKnown RBP22.84■■□□□ 1.25
CLN3-240ENST00000631023 ACKR2O00590 384 aa22.84■■□□□ 1.25
CLN3-240ENST00000631023 PRKCBP05771 671 aa22.84■■□□□ 1.25
CLN3-240ENST00000631023 PLS3P13797 630 aa22.84■■□□□ 1.25
CLN3-240ENST00000631023 PRPF4BQ13523 1007 aaKnown RBP22.84■■□□□ 1.25
CLN3-240ENST00000631023 LRRC15Q8TF66 581 aa22.84■■□□□ 1.25
CLN3-240ENST00000631023 TRIM6Q9C030 488 aaPredicted RBP22.84■■□□□ 1.25
CLN3-240ENST00000631023 A0A1B0GUA9 196 aa22.83■■□□□ 1.25
CLN3-240ENST00000631023 RB1P06400 928 aa22.83■■□□□ 1.25
CLN3-240ENST00000631023 ATF7P17544 494 aaPredicted RBP22.83■■□□□ 1.25
CLN3-240ENST00000631023 LIG1P18858 919 aa22.83■■□□□ 1.25
CLN3-240ENST00000631023 IGFBP4P22692 258 aa22.83■■□□□ 1.25
CLN3-240ENST00000631023 BMPR1AP36894 532 aa22.83■■□□□ 1.25
CLN3-240ENST00000631023 SPOUT1Q5T280 376 aaKnown RBP22.83■■□□□ 1.25
CLN3-240ENST00000631023 SV2BQ7L1I2 683 aa22.83■■□□□ 1.25
CLN3-240ENST00000631023 NTPCRQ9BSD7 190 aaKnown RBP22.83■■□□□ 1.25
CLN3-240ENST00000631023 KIFC3Q9BVG8 833 aa22.83■■□□□ 1.25
CLN3-240ENST00000631023 PANK2Q9BZ23 570 aa22.83■■□□□ 1.25
CLN3-240ENST00000631023 CCDC113Q9H0I3 377 aa22.83■■□□□ 1.25
CLN3-240ENST00000631023 PCDHA7Q9UN72 937 aa22.83■■□□□ 1.25
CLN3-240ENST00000631023 MRPL42Q9Y6G3 142 aaKnown RBP22.83■■□□□ 1.25
CLN3-240ENST00000631023 CNTNAP2Q9UHC6 1331 aa22.82■■□□□ 1.24
CLN3-240ENST00000631023 NPHP3-ACAD11A0A0J9YXS1 232 aa22.82■■□□□ 1.24
CLN3-240ENST00000631023 EPOPA6NHQ4 379 aa22.82■■□□□ 1.24
CLN3-240ENST00000631023 RFXAPO00287 272 aa22.82■■□□□ 1.24
CLN3-240ENST00000631023 B4GALT5O43286 388 aa22.82■■□□□ 1.24
CLN3-240ENST00000631023 GTPBP6O43824 516 aaPredicted RBP22.82■■□□□ 1.24
CLN3-240ENST00000631023 CTNNB1P35222 781 aa22.82■■□□□ 1.24
CLN3-240ENST00000631023 UBXN11Q5T124 520 aa22.82■■□□□ 1.24
CLN3-240ENST00000631023 AXDND1Q5T1B0 1012 aaPredicted RBP22.82■■□□□ 1.24
CLN3-240ENST00000631023 SLC27A1Q6PCB7 646 aa22.82■■□□□ 1.24
CLN3-240ENST00000631023 GLB1LQ6UWU2 654 aa22.82■■□□□ 1.24
CLN3-240ENST00000631023 MRPL10Q7Z7H8 261 aaKnown RBP22.82■■□□□ 1.24
CLN3-240ENST00000631023 HACE1Q8IYU2 909 aa22.82■■□□□ 1.24
CLN3-240ENST00000631023 SPIRE2Q8WWL2 714 aa22.82■■□□□ 1.24
CLN3-240ENST00000631023 SPATA32Q96LK8 384 aa22.82■■□□□ 1.24
CLN3-240ENST00000631023 CASD1Q96PB1 797 aa22.82■■□□□ 1.24
CLN3-240ENST00000631023 REEP2Q9BRK0 252 aa22.82■■□□□ 1.24
CLN3-240ENST00000631023 TMEM134Q9H6X4 195 aa22.82■■□□□ 1.24
CLN3-240ENST00000631023 AAASQ9NRG9 546 aa22.82■■□□□ 1.24
CLN3-240ENST00000631023 COL4A4P53420 1690 aaPredicted RBP22.82■■□□□ 1.24
CLN3-240ENST00000631023 TDRD15B5MCY1 1934 aaKnown RBP22.81■■□□□ 1.24
CLN3-240ENST00000631023 FAM13AO94988 1023 aa22.81■■□□□ 1.24
CLN3-240ENST00000631023 PDILTQ8N807 584 aa22.81■■□□□ 1.24
CLN3-240ENST00000631023 HELQQ8TDG4 1101 aa22.81■■□□□ 1.24
CLN3-240ENST00000631023 PLVAPQ9BX97 442 aa22.81■■□□□ 1.24
CLN3-240ENST00000631023 MRPL9Q9BYD2 267 aaKnown RBP22.81■■□□□ 1.24
CLN3-240ENST00000631023 SCAND2PQ9GZW5 306 aaPredicted RBP22.81■■□□□ 1.24
CLN3-240ENST00000631023 RNF19AQ9NV58 838 aa22.81■■□□□ 1.24
CLN3-240ENST00000631023 FAM13BQ9NYF5 915 aa22.81■■□□□ 1.24
CLN3-240ENST00000631023 ARHGAP28Q9P2N2 729 aa22.81■■□□□ 1.24
CLN3-240ENST00000631023 MYO7AQ13402 2215 aa22.81■■□□□ 1.24
CLN3-240ENST00000631023 C5orf67F2Z3F1 127 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 H0YCG3 227 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 N4BP3O15049 544 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 TBCAO75347 108 aaKnown RBP22.8■■□□□ 1.24
CLN3-240ENST00000631023 CACNB1Q02641 598 aaPredicted RBP22.8■■□□□ 1.24
CLN3-240ENST00000631023 GIT2Q14161 759 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 ADGRE1Q14246 886 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 LONRF3Q496Y0 759 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 NAALADL2Q58DX5 795 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 CLLU1OSQ5K130 101 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 SHC4Q6S5L8 630 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 LRRC43Q8N309 656 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 LPPQ93052 612 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 C11orf84Q9BUA3 381 aaPredicted RBP22.8■■□□□ 1.24
CLN3-240ENST00000631023 EIF2AQ9BY44 585 aaKnown RBP22.8■■□□□ 1.24
CLN3-240ENST00000631023 PARVGQ9HBI0 331 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 UBN1Q9NPG3 1134 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 TYW1Q9NV66 732 aaKnown RBP22.8■■□□□ 1.24
CLN3-240ENST00000631023 COL6A3P12111 3177 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 H3BNC9 293 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 SLC16A4O15374 487 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 LINC00271P0C7V0 271 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 ITGA4P13612 1032 aa22.8■■□□□ 1.24
CLN3-240ENST00000631023 POU3F3P20264 500 aaPredicted RBP22.8■■□□□ 1.24
CLN3-240ENST00000631023 ANP32AP39687 249 aaKnown RBP22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms