RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 GOLGA8FQ08AF8 430 aa10.44□□□□□ -0.74
PDLIM5-223ENST00000627587 GOLGA8DPQ0D2H9 430 aa10.44□□□□□ -0.74
PDLIM5-223ENST00000627587 TTLL4Q14679 1199 aa10.44□□□□□ -0.74
PDLIM5-223ENST00000627587 TARBP2Q15633 366 aaKnown RBP10.44□□□□□ -0.74
PDLIM5-223ENST00000627587 XKR3Q5GH77 459 aa10.44□□□□□ -0.74
PDLIM5-223ENST00000627587 STXBP4Q6ZWJ1 553 aa10.44□□□□□ -0.74
PDLIM5-223ENST00000627587 TRIM50Q86XT4 487 aa10.44□□□□□ -0.74
PDLIM5-223ENST00000627587 FAM178BQ8IXR5 827 aa10.44□□□□□ -0.74
PDLIM5-223ENST00000627587 USP38Q8NB14 1042 aa10.44□□□□□ -0.74
PDLIM5-223ENST00000627587 SCFD2Q8WU76 684 aa10.44□□□□□ -0.74
PDLIM5-223ENST00000627587 SEPT1Q8WYJ6 367 aa10.44□□□□□ -0.74
PDLIM5-223ENST00000627587 CEP170P1Q96L14 293 aa10.44□□□□□ -0.74
PDLIM5-223ENST00000627587 NOC4LQ9BVI4 516 aaKnown RBP10.44□□□□□ -0.74
PDLIM5-223ENST00000627587 PRDM12Q9H4Q4 367 aa10.44□□□□□ -0.74
PDLIM5-223ENST00000627587 LARSQ9P2J5 1176 aaKnown RBP10.44□□□□□ -0.74
PDLIM5-223ENST00000627587 PCDHA11Q9Y5I1 949 aa10.44□□□□□ -0.74
PDLIM5-223ENST00000627587 UNC80Q8N2C7 3258 aa10.44□□□□□ -0.74
PDLIM5-223ENST00000627587 LGALS16A8MUM7 142 aa10.43□□□□□ -0.74
PDLIM5-223ENST00000627587 ZBTB42B2RXF5 422 aa10.43□□□□□ -0.74
PDLIM5-223ENST00000627587 TPM2P07951 284 aa10.43□□□□□ -0.74
PDLIM5-223ENST00000627587 ACTN1P12814 892 aa10.43□□□□□ -0.74
PDLIM5-223ENST00000627587 PLS3P13797 630 aa10.43□□□□□ -0.74
PDLIM5-223ENST00000627587 GSDMDP57764 484 aa10.43□□□□□ -0.74
PDLIM5-223ENST00000627587 FKBP3Q00688 224 aaKnown RBP10.43□□□□□ -0.74
PDLIM5-223ENST00000627587 EDRF1Q3B7T1 1238 aa10.43□□□□□ -0.74
PDLIM5-223ENST00000627587 DUSP28Q4G0W2 176 aa10.43□□□□□ -0.74
PDLIM5-223ENST00000627587 SPECC1LQ69YQ0 1117 aa10.43□□□□□ -0.74
PDLIM5-223ENST00000627587 DRC1Q96MC2 740 aa10.43□□□□□ -0.74
PDLIM5-223ENST00000627587 TUBGCP2Q9BSJ2 902 aa10.43□□□□□ -0.74
PDLIM5-223ENST00000627587 NIFKQ9BYG3 293 aaKnown RBP10.43□□□□□ -0.74
PDLIM5-223ENST00000627587 SEPT9Q9UHD8 586 aaPredicted RBP10.43□□□□□ -0.74
PDLIM5-223ENST00000627587 ADGRA3Q8IWK6 1321 aa10.43□□□□□ -0.74
PDLIM5-223ENST00000627587 LAMA2P24043 3122 aaKnown RBP10.43□□□□□ -0.74
PDLIM5-223ENST00000627587 RNF225M0QZC1 329 aaPredicted RBP10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 NOP56O00567 594 aaKnown RBP10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 PDXKO00764 312 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 N4BP3O15049 544 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 IGFBP4P22692 258 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 MSNP26038 577 aaKnown RBP10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 RFC2P35250 354 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 CPT1AP50416 773 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 NCKAP1LP55160 1127 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 MARSP56192 900 aaKnown RBP10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 PTPN11Q06124 597 aaPredicted RBP10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 AAK1Q2M2I8 961 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 FAM160B1Q5W0V3 765 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 DHX37Q8IY37 1157 aaKnown RBP10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 PPM1EQ8WY54 764 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 TRPV6Q9H1D0 765 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 NKX2-4Q9H2Z4 354 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 ST6GALNAC4Q9H4F1 302 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 DHX33Q9H6R0 707 aaKnown RBP10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 TYW1Q9NV66 732 aaKnown RBP10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 EMSYQ7Z589 1322 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 B4GALT4O60513 344 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 DGAT1O75907 488 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 GYPCP04921 128 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 MAPTP10636 758 aaKnown RBP10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 NPTX2P47972 431 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 STAT5BP51692 787 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 MTERF2Q49AM1 385 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 TMEM139Q8IV31 216 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 C17orf53Q8N3J3 647 aaPredicted RBP10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 TC2NQ8N9U0 490 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 EMID1Q96A84 441 aaPredicted RBP10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 CEP63Q96MT8 703 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 SPATA33Q96N06 139 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 NTPCRQ9BSD7 190 aaKnown RBP10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 MTG1Q9BT17 334 aaPredicted RBP10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 AZI2Q9H6S1 392 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 CXXC1Q9P0U4 656 aaPredicted RBP10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 PCDHB13Q9Y5F0 798 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 GRIN2DO15399 1336 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 UBE4BO95155 1302 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 ITIH6Q6UXX5 1313 aa10.42□□□□□ -0.74
PDLIM5-223ENST00000627587 TISP43B9A030 160 aa10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 AKAP3O75969 853 aa10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 POU3F3P20264 500 aaPredicted RBP10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 NR2F2P24468 414 aa10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 MTIF2P46199 727 aaKnown RBP10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 CASP4P49662 377 aa10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 CCL23P55773 120 aa10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 PEX3P56589 373 aa10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 GTF2BQ00403 316 aa10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 ALCAMQ13740 583 aa10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 NFIL3Q16649 462 aa10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 FAM102BQ5T8I3 360 aa10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 OTOP2Q7RTS6 562 aa10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 TRIM59Q8IWR1 403 aa10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 RETREG2Q8NC44 543 aa10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 CCDC150Q8NCX0 1101 aa10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 TMEM161BQ8NDZ6 487 aa10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 MCPH1Q8NEM0 835 aa10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 PHOSPHO2Q8TCD6 241 aa10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 KIAA1524Q8TCG1 905 aa10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 KIFAP3Q92845 792 aa10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 BORCS6Q96GS4 357 aa10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 KIFC3Q9BVG8 833 aa10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 TMX1Q9H3N1 280 aa10.41□□□□□ -0.74
PDLIM5-223ENST00000627587 DMAC2Q9NW81 257 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms