RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 NOC4LQ9BVI4 516 aaKnown RBP8.47□□□□□ -1.05
VPS11-209ENST00000622309 PABPC3Q9H361 631 aaKnown RBP8.47□□□□□ -1.05
VPS11-209ENST00000622309 MLXIPLQ9NP71 852 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 TBCCD1Q9NVR7 557 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 SEC63Q9UGP8 760 aaKnown RBP8.47□□□□□ -1.05
VPS11-209ENST00000622309 KCNJ14Q9UNX9 436 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 SMIM31A0A1B0GVY4 71 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 PRSS47A8MTI9 375 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 CCDC188H7C350 402 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 PSMA7O14818 248 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 MAPK13O15264 365 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 NUDT17P0C025 328 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 ADD2P35612 726 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 SERPINB8P50452 374 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 ARPC4P59998 168 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 COG7P83436 770 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 CTDSPL2Q05D32 466 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 KCNMA1Q12791 1236 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 MEI1Q5TIA1 1274 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 RRAGAQ7L523 313 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 GDAP1Q8TB36 358 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 CASP10Q92851 521 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 GRAMD1AQ96CP6 724 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 TGS1Q96RS0 853 aaKnown RBP8.47□□□□□ -1.05
VPS11-209ENST00000622309 KIAA1683Q9H0B3 1180 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 CABP5Q9NP86 173 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 PRKAG3Q9UGI9 489 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 TRIM75PA6NK02 468 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 PGRMC1O00264 195 aaKnown RBP8.47□□□□□ -1.05
VPS11-209ENST00000622309 GTPBP6O43824 516 aaPredicted RBP8.47□□□□□ -1.05
VPS11-209ENST00000622309 KRT36O76013 467 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 RPN1P04843 607 aaKnown RBP8.47□□□□□ -1.05
VPS11-209ENST00000622309 IGKV5-2P06315 115 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 HOXB7P09629 217 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 STIP1P31948 543 aaKnown RBP8.47□□□□□ -1.05
VPS11-209ENST00000622309 STX2P32856 288 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 GEMIN4P57678 1058 aaKnown RBP8.47□□□□□ -1.05
VPS11-209ENST00000622309 PDIA6Q15084 440 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 EPHA10Q5JZY3 1008 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 DAB2IPQ5VWQ8 1189 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 C9orf131Q5VYM1 1079 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 B3GNT6Q6ZMB0 384 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 CSGALNACT2Q8N6G5 542 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 NRG4Q8WWG1 115 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 MMRN2Q9H8L6 949 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 FAM207AQ9NSI2 230 aaPredicted RBP8.47□□□□□ -1.05
VPS11-209ENST00000622309 DDX18Q9NVP1 670 aaKnown RBP8.47□□□□□ -1.05
VPS11-209ENST00000622309 SEL1LQ9UBV2 794 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 TMEM59LQ9UK28 342 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 RREB1Q92766 1687 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 NPHP3-ACAD11A0A0J9YXS1 232 aa8.46□□□□□ -1.05
VPS11-209ENST00000622309 TMEM110-MUSTN1A8MSY1 372 aa8.46□□□□□ -1.05
VPS11-209ENST00000622309 RASGRF2O14827 1237 aa8.46□□□□□ -1.05
VPS11-209ENST00000622309 TTI1O43156 1089 aa8.46□□□□□ -1.05
VPS11-209ENST00000622309 ZBTB43O43298 467 aa8.46□□□□□ -1.05
VPS11-209ENST00000622309 LCA5LO95447 670 aa8.46□□□□□ -1.05
VPS11-209ENST00000622309 MMP1P03956 469 aa8.46□□□□□ -1.05
VPS11-209ENST00000622309 ENPP1P22413 925 aa8.46□□□□□ -1.05
VPS11-209ENST00000622309 TMED10P49755 219 aaKnown RBP8.46□□□□□ -1.05
VPS11-209ENST00000622309 ITGA9Q13797 1035 aa8.46□□□□□ -1.05
VPS11-209ENST00000622309 CERKLQ49MI3 558 aaPredicted RBP8.46□□□□□ -1.05
VPS11-209ENST00000622309 SMUG1Q53HV7 270 aa8.46□□□□□ -1.05
VPS11-209ENST00000622309 NAALADL2Q58DX5 795 aa8.46□□□□□ -1.05
VPS11-209ENST00000622309 TNNI3KQ59H18 835 aa8.46□□□□□ -1.05
VPS11-209ENST00000622309 FIGNQ5HY92 759 aa8.46□□□□□ -1.05
VPS11-209ENST00000622309 UBE2Q1Q7Z7E8 422 aa8.46□□□□□ -1.05
VPS11-209ENST00000622309 RAVER1Q8IY67 606 aaKnown RBP8.46□□□□□ -1.05
VPS11-209ENST00000622309 MB21D2Q8IYB1 491 aaPredicted RBP8.46□□□□□ -1.05
VPS11-209ENST00000622309 SCFD2Q8WU76 684 aa8.46□□□□□ -1.05
VPS11-209ENST00000622309 DGCR14Q96DF8 476 aaKnown RBP8.46□□□□□ -1.05
VPS11-209ENST00000622309 EEF2KMTQ96G04 330 aa8.46□□□□□ -1.05
VPS11-209ENST00000622309 DRC3Q9H069 523 aa8.46□□□□□ -1.05
VPS11-209ENST00000622309 PPP1R9AQ9ULJ8 1098 aa8.46□□□□□ -1.05
VPS11-209ENST00000622309 ANGEL1Q9UNK9 670 aaKnown RBP8.46□□□□□ -1.05
VPS11-209ENST00000622309 FAF1Q9UNN5 650 aaPredicted RBP8.46□□□□□ -1.05
VPS11-209ENST00000622309 FPGT-TNNI3KV9GXZ4 949 aa8.46□□□□□ -1.05
VPS11-209ENST00000622309 WDR46O15213 610 aaKnown RBP8.46□□□□□ -1.06
VPS11-209ENST00000622309 POLGP54098 1239 aaPredicted RBP8.46□□□□□ -1.06
VPS11-209ENST00000622309 CDR2Q01850 454 aa8.46□□□□□ -1.06
VPS11-209ENST00000622309 GIT2Q14161 759 aa8.46□□□□□ -1.06
VPS11-209ENST00000622309 SLC29A2Q14542 456 aa8.46□□□□□ -1.06
VPS11-209ENST00000622309 HLFQ16534 295 aa8.46□□□□□ -1.06
VPS11-209ENST00000622309 KCTD19Q17RG1 926 aaPredicted RBP8.46□□□□□ -1.06
VPS11-209ENST00000622309 WDR72Q3MJ13 1102 aa8.46□□□□□ -1.06
VPS11-209ENST00000622309 SLC2A7Q6PXP3 512 aa8.46□□□□□ -1.06
VPS11-209ENST00000622309 C4orf50Q6ZRC1 276 aa8.46□□□□□ -1.06
VPS11-209ENST00000622309 WDR75Q8IWA0 830 aaKnown RBP8.46□□□□□ -1.06
VPS11-209ENST00000622309 DIS3LQ8TF46 1054 aaKnown RBP8.46□□□□□ -1.06
VPS11-209ENST00000622309 DBNDD2Q9BQY9 259 aa8.46□□□□□ -1.06
VPS11-209ENST00000622309 PITPNM3Q9BZ71 974 aa8.46□□□□□ -1.06
VPS11-209ENST00000622309 FOXP1Q9H334 677 aaPredicted RBP8.46□□□□□ -1.06
VPS11-209ENST00000622309 SLITRK6Q9H5Y7 841 aa8.46□□□□□ -1.06
VPS11-209ENST00000622309 TIMMDC1Q9NPL8 285 aa8.46□□□□□ -1.06
VPS11-209ENST00000622309 AIPL1Q9NZN9 384 aa8.46□□□□□ -1.06
VPS11-209ENST00000622309 ZNF212Q9UDV6 495 aa8.46□□□□□ -1.06
VPS11-209ENST00000622309 DBR1Q9UK59 544 aaKnown RBP8.46□□□□□ -1.06
VPS11-209ENST00000622309 HEY1Q9Y5J3 304 aa8.46□□□□□ -1.06
VPS11-209ENST00000622309 BCL9O00512 1426 aa8.46□□□□□ -1.06
VPS11-209ENST00000622309 SPATA31A1Q5TZJ5 1347 aa8.46□□□□□ -1.06
VPS11-209ENST00000622309 TMEM120BA0PK00 339 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms