RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 CTDNEP1O95476 244 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 GALTP07902 379 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 SRGAP2CP0DJJ0 459 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 CA8P35219 290 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 PBX3P40426 434 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 SPIRE1Q08AE8 756 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 SIGLEC14Q08ET2 396 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 SAFBQ15424 915 aaKnown RBP eCLIP13.28□□□□□ -0.28
UPF3B-204ENST00000619445 LLGL2Q6P1M3 1020 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 NOTUMQ6P988 496 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 SYCE2Q6PIF2 218 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 HFE2Q6ZVN8 426 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 IFNLR1Q8IU57 520 aaPredicted RBP13.28□□□□□ -0.28
UPF3B-204ENST00000619445 KSR1Q8IVT5 923 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 TPH2Q8IWU9 490 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 SUGP1Q8IWZ8 645 aaKnown RBP13.28□□□□□ -0.28
UPF3B-204ENST00000619445 RNF149Q8NC42 400 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 OXER1Q8TDS5 423 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 TMEM143Q96AN5 459 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 DYDC2Q96IM9 177 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 EMILIN2Q9BXX0 1053 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 NFKBIZQ9BYH8 718 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 ZBP1Q9H171 429 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 NRDE2Q9H7Z3 1164 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 DPP7Q9UHL4 492 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 INPP5FQ9Y2H2 1132 aa13.28□□□□□ -0.28
UPF3B-204ENST00000619445 TMEM221A6NGB7 291 aa13.27□□□□□ -0.29
UPF3B-204ENST00000619445 M0R296 226 aa13.27□□□□□ -0.29
UPF3B-204ENST00000619445 CLASP2O75122 1294 aaKnown RBP13.27□□□□□ -0.29
UPF3B-204ENST00000619445 SLITRK3O94933 977 aa13.27□□□□□ -0.29
UPF3B-204ENST00000619445 ALDH2P05091 517 aa13.27□□□□□ -0.29
UPF3B-204ENST00000619445 NCLP19338 710 aaKnown RBP13.27□□□□□ -0.29
UPF3B-204ENST00000619445 NR5A1Q13285 461 aa13.27□□□□□ -0.29
UPF3B-204ENST00000619445 ORC2Q13416 577 aaPredicted RBP13.27□□□□□ -0.29
UPF3B-204ENST00000619445 TNFRSF25Q93038 417 aa13.27□□□□□ -0.29
UPF3B-204ENST00000619445 LPPQ93052 612 aa13.27□□□□□ -0.29
UPF3B-204ENST00000619445 HSD17B14Q9BPX1 270 aa13.27□□□□□ -0.29
UPF3B-204ENST00000619445 EIF2AK1Q9BQI3 630 aaKnown RBP13.27□□□□□ -0.29
UPF3B-204ENST00000619445 TTC12Q9H892 705 aaPredicted RBP13.27□□□□□ -0.29
UPF3B-204ENST00000619445 RGL1Q9NZL6 768 aa13.27□□□□□ -0.29
UPF3B-204ENST00000619445 ZMYM2Q9UBW7 1377 aa13.27□□□□□ -0.29
UPF3B-204ENST00000619445 CACNA1HO95180 2353 aa13.26□□□□□ -0.29
UPF3B-204ENST00000619445 NT5C1B-RDH14C9J2C7 533 aa13.26□□□□□ -0.29
UPF3B-204ENST00000619445 FDPSP14324 419 aaKnown RBP13.26□□□□□ -0.29
UPF3B-204ENST00000619445 HOXA11P31270 313 aaPredicted RBP13.26□□□□□ -0.29
UPF3B-204ENST00000619445 NEK4P51957 841 aa13.26□□□□□ -0.29
UPF3B-204ENST00000619445 PTENP60484 403 aa13.26□□□□□ -0.29
UPF3B-204ENST00000619445 CYP4A11Q02928 519 aa13.26□□□□□ -0.29
UPF3B-204ENST00000619445 CTTNQ14247 550 aaKnown RBP13.26□□□□□ -0.29
UPF3B-204ENST00000619445 ME3Q16798 604 aa13.26□□□□□ -0.29
UPF3B-204ENST00000619445 PTPN21Q16825 1174 aa13.26□□□□□ -0.29
UPF3B-204ENST00000619445 ATAT1Q5SQI0 421 aa13.26□□□□□ -0.29
UPF3B-204ENST00000619445 AGMOQ6ZNB7 445 aa13.26□□□□□ -0.29
UPF3B-204ENST00000619445 ZBTB33Q86T24 672 aa13.26□□□□□ -0.29
UPF3B-204ENST00000619445 DIS3L2Q8IYB7 885 aaKnown RBP13.26□□□□□ -0.29
UPF3B-204ENST00000619445 UBALD2Q8IYN6 164 aa13.26□□□□□ -0.29
UPF3B-204ENST00000619445 PLCD3Q8N3E9 789 aa13.26□□□□□ -0.29
UPF3B-204ENST00000619445 NSUN7Q8NE18 718 aaKnown RBP13.26□□□□□ -0.29
UPF3B-204ENST00000619445 PBXIP1Q96AQ6 731 aa13.26□□□□□ -0.29
UPF3B-204ENST00000619445 IRF2BPLQ9H1B7 796 aa13.26□□□□□ -0.29
UPF3B-204ENST00000619445 WRAP73Q9P2S5 460 aaPredicted RBP13.26□□□□□ -0.29
UPF3B-204ENST00000619445 USTQ9Y2C2 406 aa13.26□□□□□ -0.29
UPF3B-204ENST00000619445 FAN1Q9Y2M0 1017 aa13.26□□□□□ -0.29
UPF3B-204ENST00000619445 INPPL1O15357 1258 aa13.25□□□□□ -0.29
UPF3B-204ENST00000619445 ITGA4P13612 1032 aa13.25□□□□□ -0.29
UPF3B-204ENST00000619445 NUBP1P53384 320 aa13.25□□□□□ -0.29
UPF3B-204ENST00000619445 RBM10P98175 930 aaKnown RBP13.25□□□□□ -0.29
UPF3B-204ENST00000619445 KIAA1841Q6NSI8 718 aa13.25□□□□□ -0.29
UPF3B-204ENST00000619445 CABP7Q86V35 215 aa13.25□□□□□ -0.29
UPF3B-204ENST00000619445 FBXL6Q8N531 539 aa13.25□□□□□ -0.29
UPF3B-204ENST00000619445 ZNF579Q8NAF0 562 aaKnown RBP13.25□□□□□ -0.29
UPF3B-204ENST00000619445 MCPH1Q8NEM0 835 aa13.25□□□□□ -0.29
UPF3B-204ENST00000619445 ERMNQ8TAM6 284 aa13.25□□□□□ -0.29
UPF3B-204ENST00000619445 TRIM6Q9C030 488 aaPredicted RBP13.25□□□□□ -0.29
UPF3B-204ENST00000619445 GBP3Q9H0R5 595 aa13.25□□□□□ -0.29
UPF3B-204ENST00000619445 MINDY3Q9H8M7 445 aa13.25□□□□□ -0.29
UPF3B-204ENST00000619445 MRPL17Q9NRX2 175 aaKnown RBP13.25□□□□□ -0.29
UPF3B-204ENST00000619445 GJB4Q9NTQ9 266 aa13.25□□□□□ -0.29
UPF3B-204ENST00000619445 GIT1Q9Y2X7 761 aa13.25□□□□□ -0.29
UPF3B-204ENST00000619445 MYO10Q9HD67 2058 aa13.25□□□□□ -0.29
UPF3B-204ENST00000619445 BTBD18B2RXH4 712 aa13.24□□□□□ -0.29
UPF3B-204ENST00000619445 INO80B-WBP1J3KQ70 363 aa13.24□□□□□ -0.29
UPF3B-204ENST00000619445 C1RP00736 705 aa13.24□□□□□ -0.29
UPF3B-204ENST00000619445 SLC11A1P49279 550 aa13.24□□□□□ -0.29
UPF3B-204ENST00000619445 MTMR3Q13615 1198 aa13.24□□□□□ -0.29
UPF3B-204ENST00000619445 EARS2Q5JPH6 523 aaKnown RBP13.24□□□□□ -0.29
UPF3B-204ENST00000619445 CYP26C1Q6V0L0 522 aa13.24□□□□□ -0.29
UPF3B-204ENST00000619445 GPR65Q8IYL9 337 aa13.24□□□□□ -0.29
UPF3B-204ENST00000619445 NECAB1Q8N987 351 aa13.24□□□□□ -0.29
UPF3B-204ENST00000619445 PRIMPOLQ96LW4 560 aa13.24□□□□□ -0.29
UPF3B-204ENST00000619445 LLPHQ9BRT6 129 aaKnown RBP13.24□□□□□ -0.29
UPF3B-204ENST00000619445 CSRNP2Q9H175 543 aa13.24□□□□□ -0.29
UPF3B-204ENST00000619445 SFXN1Q9H9B4 322 aa13.24□□□□□ -0.29
UPF3B-204ENST00000619445 TUFT1Q9NNX1 390 aa13.24□□□□□ -0.29
UPF3B-204ENST00000619445 SORCS3Q9UPU3 1222 aa13.24□□□□□ -0.29
UPF3B-204ENST00000619445 TDRD15B5MCY1 1934 aaKnown RBP13.24□□□□□ -0.29
UPF3B-204ENST00000619445 SPDYE4A6NLX3 237 aa13.23□□□□□ -0.29
UPF3B-204ENST00000619445 TSPAN1O60635 241 aa13.23□□□□□ -0.29
UPF3B-204ENST00000619445 SOD2P04179 222 aa13.23□□□□□ -0.29
UPF3B-204ENST00000619445 URODP06132 367 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms