RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 AGGF1Q8N302 714 aaeCLIP10.97□□□□□ -0.65
VPS39-214ENST00000614932 SYT2Q8N9I0 419 aaPredicted RBP10.97□□□□□ -0.65
VPS39-214ENST00000614932 LRRC8CQ8TDW0 803 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 SCG3Q8WXD2 468 aaKnown RBP10.97□□□□□ -0.65
VPS39-214ENST00000614932 CGREF1Q99674 301 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 FAIMQ9NVQ4 179 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 RNF14Q9UBS8 474 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 RASAL2Q9UJF2 1139 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 CD2APQ9Y5K6 639 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 STK36Q9NRP7 1315 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 TNRC6CQ9HCJ0 1690 aaKnown RBP10.97□□□□□ -0.65
VPS39-214ENST00000614932 KANSL1LA0AUZ9 987 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 UNC5CO95185 931 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 S100A1P23297 94 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 KRT31Q15323 416 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.97□□□□□ -0.65
VPS39-214ENST00000614932 PIK3AP1Q6ZUJ8 805 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 MARK2Q7KZI7 788 aaKnown RBP10.97□□□□□ -0.65
VPS39-214ENST00000614932 WDR75Q8IWA0 830 aaKnown RBP10.97□□□□□ -0.65
VPS39-214ENST00000614932 FAM13CQ8NE31 585 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 UHMK1Q8TAS1 419 aaKnown RBP10.97□□□□□ -0.65
VPS39-214ENST00000614932 FBXO41Q8TF61 875 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 UBLCP1Q8WVY7 318 aaPredicted RBP10.97□□□□□ -0.65
VPS39-214ENST00000614932 PSMB7Q99436 277 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 ISCUQ9H1K1 167 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 DPH5Q9H2P9 285 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 SYNCQ9H7C4 482 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 IL17RBQ9NRM6 502 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 LIMA1Q9UHB6 759 aaKnown RBP10.97□□□□□ -0.65
VPS39-214ENST00000614932 FBXO2Q9UK22 296 aaPredicted RBP10.97□□□□□ -0.65
VPS39-214ENST00000614932 FBXO9Q9UK97 447 aaPredicted RBP10.97□□□□□ -0.65
VPS39-214ENST00000614932 TBC1D30Q9Y2I9 924 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 TTLL3Q9Y4R7 772 aa10.97□□□□□ -0.65
VPS39-214ENST00000614932 MYH1P12882 1939 aa10.96□□□□□ -0.65
VPS39-214ENST00000614932 LAMB2P55268 1798 aa10.96□□□□□ -0.65
VPS39-214ENST00000614932 TTC26A0AVF1 554 aa10.96□□□□□ -0.65
VPS39-214ENST00000614932 PABPC4LP0CB38 370 aaKnown RBP10.96□□□□□ -0.65
VPS39-214ENST00000614932 UBTFL6P0CB48 400 aaPredicted RBP10.96□□□□□ -0.65
VPS39-214ENST00000614932 FUT2Q10981 343 aa10.96□□□□□ -0.65
VPS39-214ENST00000614932 PICALMQ13492 652 aa10.96□□□□□ -0.65
VPS39-214ENST00000614932 TRADDQ15628 312 aa10.96□□□□□ -0.65
VPS39-214ENST00000614932 CCDC6Q16204 474 aa10.96□□□□□ -0.65
VPS39-214ENST00000614932 WDR59Q6PJI9 974 aa10.96□□□□□ -0.65
VPS39-214ENST00000614932 FITM2Q8N6M3 262 aa10.96□□□□□ -0.65
VPS39-214ENST00000614932 CASP10Q92851 521 aa10.96□□□□□ -0.65
VPS39-214ENST00000614932 DDX50Q9BQ39 737 aaKnown RBP10.96□□□□□ -0.65
VPS39-214ENST00000614932 SELENOSQ9BQE4 189 aa10.96□□□□□ -0.65
VPS39-214ENST00000614932 MAK16Q9BXY0 300 aaKnown RBP10.96□□□□□ -0.65
VPS39-214ENST00000614932 DRC3Q9H069 523 aa10.96□□□□□ -0.65
VPS39-214ENST00000614932 VPS16Q9H269 839 aa10.96□□□□□ -0.65
VPS39-214ENST00000614932 TXLNGQ9NUQ3 528 aa10.96□□□□□ -0.65
VPS39-214ENST00000614932 PNMA2Q9UL42 364 aa10.96□□□□□ -0.65
VPS39-214ENST00000614932 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.96□□□□□ -0.65
VPS39-214ENST00000614932 CTDP1Q9Y5B0 961 aaPredicted RBP10.96□□□□□ -0.65
VPS39-214ENST00000614932 A6NJR5 290 aa10.96□□□□□ -0.66
VPS39-214ENST00000614932 KDM1AO60341 852 aa10.96□□□□□ -0.66
VPS39-214ENST00000614932 ZCCHC18P0CG32 403 aa10.96□□□□□ -0.66
VPS39-214ENST00000614932 KRT2P35908 639 aa10.96□□□□□ -0.66
VPS39-214ENST00000614932 RASSF7Q02833 373 aa10.96□□□□□ -0.66
VPS39-214ENST00000614932 RNASELQ05823 741 aaKnown RBP10.96□□□□□ -0.66
VPS39-214ENST00000614932 SNX30Q5VWJ9 437 aa10.96□□□□□ -0.66
VPS39-214ENST00000614932 RIBC1Q8N443 379 aaPredicted RBP10.96□□□□□ -0.66
VPS39-214ENST00000614932 SCAIQ8N9R8 606 aa10.96□□□□□ -0.66
VPS39-214ENST00000614932 GDAP1Q8TB36 358 aa10.96□□□□□ -0.66
VPS39-214ENST00000614932 GFM2Q969S9 779 aaKnown RBP10.96□□□□□ -0.66
VPS39-214ENST00000614932 CENPOQ9BU64 300 aa10.96□□□□□ -0.66
VPS39-214ENST00000614932 RNF26Q9BY78 433 aaPredicted RBP10.96□□□□□ -0.66
VPS39-214ENST00000614932 FOXP1Q9H334 677 aaPredicted RBP10.96□□□□□ -0.66
VPS39-214ENST00000614932 VAT1LQ9HCJ6 419 aa10.96□□□□□ -0.66
VPS39-214ENST00000614932 INTS9Q9NV88 658 aaKnown RBP10.96□□□□□ -0.66
VPS39-214ENST00000614932 QPCTLQ9NXS2 382 aa10.96□□□□□ -0.66
VPS39-214ENST00000614932 PTTG2Q9NZH5 202 aa10.96□□□□□ -0.66
VPS39-214ENST00000614932 DKK3Q9UBP4 350 aa10.96□□□□□ -0.66
VPS39-214ENST00000614932 POLLQ9UGP5 575 aa10.96□□□□□ -0.66
VPS39-214ENST00000614932 PRELID1Q9Y255 219 aa10.96□□□□□ -0.66
VPS39-214ENST00000614932 CARD8Q9Y2G2 431 aa10.96□□□□□ -0.66
VPS39-214ENST00000614932 ARL2BPQ9Y2Y0 163 aa10.96□□□□□ -0.66
VPS39-214ENST00000614932 TSC22D4Q9Y3Q8 395 aa10.96□□□□□ -0.66
VPS39-214ENST00000614932 FAM32AQ9Y421 112 aaKnown RBP10.96□□□□□ -0.66
VPS39-214ENST00000614932 CAPN6Q9Y6Q1 641 aa10.96□□□□□ -0.66
VPS39-214ENST00000614932 XDHP47989 1333 aa10.96□□□□□ -0.66
VPS39-214ENST00000614932 ECM29Q5VYK3 1845 aa10.96□□□□□ -0.66
VPS39-214ENST00000614932 CASZ1Q86V15 1759 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 A0A087X0B3 334 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 ECE2O60344 883 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 SERPINB7O75635 380 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 GJB6O95452 261 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 TSPY3P0CV98 308 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 TSPY8P0CW00 308 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 MCM7P33993 719 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 BTDP43251 543 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 MMP13P45452 471 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 COPB1P53618 953 aaKnown RBP10.95□□□□□ -0.66
VPS39-214ENST00000614932 EIF6P56537 245 aaKnown RBP10.95□□□□□ -0.66
VPS39-214ENST00000614932 CUL1Q13616 776 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 RILPL1Q5EBL4 403 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 TMTC3Q6ZXV5 915 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 OTUD6AQ7L8S5 288 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 ZNF804AQ7Z570 1209 aa10.95□□□□□ -0.66
VPS39-214ENST00000614932 KRT12Q99456 494 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms