RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	SPC25	Q9HBM1	224 aa		12.79	□□□□□ -0.36
VRK3-223	ENST00000601341	COL1A2	P08123	1366 aa		12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	CCDC169	A6NNP5	214 aa		12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	PDXK	O00764	312 aa		12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	RARB	P10826	455 aa		12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	INSRR	P14616	1297 aa		12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	ABCD1	P33897	745 aa		12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	CYLC1	P35663	651 aa	Predicted RBP	12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	NPTX2	P47972	431 aa		12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	NCKAP1L	P55160	1127 aa		12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	SOX10	P56693	466 aa		12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	PPP2R5A	Q15172	486 aa		12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	FSCN1	Q16658	493 aa	Known RBP	12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	ZCWPW2	Q504Y3	356 aa		12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	ZNF569	Q5MCW4	686 aa		12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	HAUS6	Q7Z4H7	955 aa		12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	MSANTD4	Q8NCY6	345 aa		12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	TMEM143	Q96AN5	459 aa		12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	RPGRIP1	Q96KN7	1286 aa		12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	STRA6	Q9BX79	667 aa		12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	EDEM3	Q9BZQ6	932 aa		12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	KMT5A	Q9NQR1	393 aa		12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	RAB21	Q9UL25	225 aa		12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	TRAF3IP3	Q9Y228	551 aa		12.78	□□□□□ -0.36
VRK3-223	ENST00000601341	WDR81	Q562E7	1941 aa		12.77	□□□□□ -0.36
VRK3-223	ENST00000601341	IGKV6-21	A0A0C4DH24	114 aa		12.77	□□□□□ -0.36
VRK3-223	ENST00000601341		H0YCG3	227 aa		12.77	□□□□□ -0.36
VRK3-223	ENST00000601341	SLC16A4	O15374	487 aa		12.77	□□□□□ -0.36
VRK3-223	ENST00000601341	MAGEB2	O15479	319 aa		12.77	□□□□□ -0.36
VRK3-223	ENST00000601341	KPNA6	O60684	536 aa		12.77	□□□□□ -0.36
VRK3-223	ENST00000601341	PPP1R37	O75864	691 aa		12.77	□□□□□ -0.36
VRK3-223	ENST00000601341	F2	P00734	622 aa		12.77	□□□□□ -0.36
VRK3-223	ENST00000601341	SCP2	P22307	547 aa		12.77	□□□□□ -0.36
VRK3-223	ENST00000601341	HOXD13	P35453	343 aa		12.77	□□□□□ -0.36
VRK3-223	ENST00000601341	ARL2	P36404	184 aa		12.77	□□□□□ -0.36
VRK3-223	ENST00000601341	GJA9	P57773	515 aa		12.77	□□□□□ -0.36
VRK3-223	ENST00000601341	GTF2B	Q00403	316 aa		12.77	□□□□□ -0.36
VRK3-223	ENST00000601341	FKBP3	Q00688	224 aa	Known RBP	12.77	□□□□□ -0.36
VRK3-223	ENST00000601341	EDRF1	Q3B7T1	1238 aa		12.77	□□□□□ -0.36
VRK3-223	ENST00000601341	FKBP15	Q5T1M5	1219 aa		12.77	□□□□□ -0.36
VRK3-223	ENST00000601341	IER5	Q5VY09	327 aa		12.77	□□□□□ -0.36
VRK3-223	ENST00000601341	CC2D1A	Q6P1N0	951 aa	Predicted RBP	12.77	□□□□□ -0.36
VRK3-223	ENST00000601341	SLAIN1	Q8ND83	568 aa		12.77	□□□□□ -0.36
VRK3-223	ENST00000601341	UBXN6	Q9BZV1	441 aa		12.77	□□□□□ -0.36
VRK3-223	ENST00000601341	TMEM206	Q9H813	350 aa		12.77	□□□□□ -0.36
VRK3-223	ENST00000601341	PRDM4	Q9UKN5	801 aa		12.77	□□□□□ -0.36
VRK3-223	ENST00000601341	CASP8AP2	Q9UKL3	1982 aa		12.77	□□□□□ -0.37
VRK3-223	ENST00000601341	EIF3CL	B5ME19	914 aa	Known RBP	12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	KRT86	O43790	486 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	CALU	O43852	315 aa	Predicted RBP	12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	IPO7	O95373	1038 aa	Known RBP	12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	C6orf222	P0C671	652 aa	Predicted RBP	12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	NAMPT	P43490	491 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	MXD4	Q14582	209 aa	Predicted RBP	12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	TERF2	Q15554	542 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	MAP3K21	Q5TCX8	1036 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	HS2ST1	Q7LGA3	356 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	TMEM161B	Q8NDZ6	487 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	TRAPPC12	Q8WVT3	735 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	BSND	Q8WZ55	320 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	HVCN1	Q96D96	273 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	CNOT6L	Q96LI5	555 aa	Known RBP	12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	ACCS	Q96QU6	501 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	EIF3C	Q99613	913 aa	Known RBP	12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	TSGA10	Q9BZW7	698 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	UPF3A	Q9H1J1	476 aa	Known RBP	12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	SUGCT	Q9HAC7	445 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	TYW1	Q9NV66	732 aa	Known RBP	12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	WBP1L	Q9NX94	342 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	TSKS	Q9UJT2	592 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	ANO9	A1A5B4	782 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	RRN3P2	A6NIE6	340 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	RNF225	M0QZC1	329 aa	Predicted RBP	12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	ZEB2	O60315	1214 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	C22orf31	O95567	290 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	MYL3	P08590	195 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	TRIM21	P19474	475 aa	Known RBP	12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	CCND3	P30281	292 aa	Predicted RBP	12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	IGBP1	P78318	339 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	NKX3-2	P78367	333 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	BEX3	Q00994	111 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	AMPD2	Q01433	879 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	KCNA1	Q09470	495 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	PPFIA1	Q13136	1202 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	KIAA0753	Q2KHM9	967 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	GNAS	Q5JWF2	1037 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	MIIP	Q5JXC2	388 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	WDR59	Q6PJI9	974 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	SYCP3	Q8IZU3	236 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	SLC35F6	Q8N357	371 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	ACRBP	Q8NEB7	543 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	GOLGA5	Q8TBA6	731 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	PSPC1	Q8WXF1	523 aa	Known RBP	12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	KAT2B	Q92831	832 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	CEP63	Q96MT8	703 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	KATNAL1	Q9BW62	490 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	PARD6B	Q9BYG5	372 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	GBP3	Q9H0R5	595 aa		12.76	□□□□□ -0.37
VRK3-223	ENST00000601341	XPNPEP3	Q9NQH7	507 aa		12.76	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms