RNA–Protein interactions for RNA: ENST00000600286.1

USHBP1-210, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-210ENST00000600286 SMARCE1Q969G3 411 aa18.37■□□□□ 0.53
USHBP1-210ENST00000600286 ERVK-5Q9HDB9 667 aa18.37■□□□□ 0.53
USHBP1-210ENST00000600286 EXOC7Q9UPT5 735 aa18.37■□□□□ 0.53
USHBP1-210ENST00000600286 PIN4Q9Y237 131 aaKnown RBP18.37■□□□□ 0.53
USHBP1-210ENST00000600286 ZBBXA8MT70 800 aa18.36■□□□□ 0.53
USHBP1-210ENST00000600286 ACKR2O00590 384 aa18.36■□□□□ 0.53
USHBP1-210ENST00000600286 GCNT3O95395 438 aa18.36■□□□□ 0.53
USHBP1-210ENST00000600286 SKIP12755 728 aa18.36■□□□□ 0.53
USHBP1-210ENST00000600286 FGFR4P22455 802 aa18.36■□□□□ 0.53
USHBP1-210ENST00000600286 FAM187BQ17R55 369 aa18.36■□□□□ 0.53
USHBP1-210ENST00000600286 FAM26FQ5R3K3 315 aa18.36■□□□□ 0.53
USHBP1-210ENST00000600286 ARID2Q68CP9 1835 aa18.36■□□□□ 0.53
USHBP1-210ENST00000600286 NOTUMQ6P988 496 aa18.36■□□□□ 0.53
USHBP1-210ENST00000600286 PPP4R3CPQ6ZMV5 832 aa18.36■□□□□ 0.53
USHBP1-210ENST00000600286 ZNF720Q7Z2F6 126 aa18.36■□□□□ 0.53
USHBP1-210ENST00000600286 TMEM161BQ8NDZ6 487 aa18.36■□□□□ 0.53
USHBP1-210ENST00000600286 HVCN1Q96D96 273 aa18.36■□□□□ 0.53
USHBP1-210ENST00000600286 CCDC51Q96ER9 411 aa18.36■□□□□ 0.53
USHBP1-210ENST00000600286 BICD1Q96G01 975 aa18.36■□□□□ 0.53
USHBP1-210ENST00000600286 GSDMAQ96QA5 445 aa18.36■□□□□ 0.53
USHBP1-210ENST00000600286 KIFC3Q9BVG8 833 aa18.36■□□□□ 0.53
USHBP1-210ENST00000600286 MRPL4Q9BYD3 311 aaKnown RBP18.36■□□□□ 0.53
USHBP1-210ENST00000600286 FZD8Q9H461 694 aa18.36■□□□□ 0.53
USHBP1-210ENST00000600286 MINDY3Q9H8M7 445 aa18.36■□□□□ 0.53
USHBP1-210ENST00000600286 TBC1D7Q9P0N9 293 aa18.36■□□□□ 0.53
USHBP1-210ENST00000600286 ARHGAP28Q9P2N2 729 aa18.36■□□□□ 0.53
USHBP1-210ENST00000600286 CASP1P29466 404 aa18.35■□□□□ 0.53
USHBP1-210ENST00000600286 NMT1P30419 496 aaKnown RBP18.35■□□□□ 0.53
USHBP1-210ENST00000600286 DPYDQ12882 1025 aa18.35■□□□□ 0.53
USHBP1-210ENST00000600286 GPNMBQ14956 572 aa18.35■□□□□ 0.53
USHBP1-210ENST00000600286 TMEM240Q5SV17 173 aa18.35■□□□□ 0.53
USHBP1-210ENST00000600286 TWF2Q6IBS0 349 aaKnown RBP18.35■□□□□ 0.53
USHBP1-210ENST00000600286 OTOP2Q7RTS6 562 aa18.35■□□□□ 0.53
USHBP1-210ENST00000600286 SYCP3Q8IZU3 236 aa18.35■□□□□ 0.53
USHBP1-210ENST00000600286 ACCSQ96QU6 501 aa18.35■□□□□ 0.53
USHBP1-210ENST00000600286 ADPGKQ9BRR6 497 aa18.35■□□□□ 0.53
USHBP1-210ENST00000600286 ST6GALNAC4Q9H4F1 302 aa18.35■□□□□ 0.53
USHBP1-210ENST00000600286 C1orf112Q9NSG2 853 aa18.35■□□□□ 0.53
USHBP1-210ENST00000600286 UNC80Q8N2C7 3258 aa18.34■□□□□ 0.53
USHBP1-210ENST00000600286 N4BP3O15049 544 aa18.34■□□□□ 0.53
USHBP1-210ENST00000600286 AMHP03971 560 aa18.34■□□□□ 0.53
USHBP1-210ENST00000600286 GTF2BQ00403 316 aa18.34■□□□□ 0.53
USHBP1-210ENST00000600286 PNOCQ13519 176 aa18.34■□□□□ 0.53
USHBP1-210ENST00000600286 KCNB1Q14721 858 aa18.34■□□□□ 0.53
USHBP1-210ENST00000600286 KMT5BQ4FZB7 885 aa18.34■□□□□ 0.53
USHBP1-210ENST00000600286 HACE1Q8IYU2 909 aa18.34■□□□□ 0.53
USHBP1-210ENST00000600286 SYAP1Q96A49 352 aaPredicted RBP18.34■□□□□ 0.53
USHBP1-210ENST00000600286 ADAM2Q99965 735 aa18.34■□□□□ 0.53
USHBP1-210ENST00000600286 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.34■□□□□ 0.53
USHBP1-210ENST00000600286 TCHPQ9BT92 498 aa18.34■□□□□ 0.53
USHBP1-210ENST00000600286 TRIM6Q9C030 488 aaPredicted RBP18.34■□□□□ 0.53
USHBP1-210ENST00000600286 NUP62CLQ9H1M0 184 aa18.34■□□□□ 0.53
USHBP1-210ENST00000600286 TMEM206Q9H813 350 aa18.34■□□□□ 0.53
USHBP1-210ENST00000600286 AGPAT5Q9NUQ2 364 aa18.34■□□□□ 0.53
USHBP1-210ENST00000600286 TBX20Q9UMR3 447 aa18.34■□□□□ 0.53
USHBP1-210ENST00000600286 PRR29P0C7W0 189 aa18.33■□□□□ 0.52
USHBP1-210ENST00000600286 STAG3L1P0CL83 205 aa18.33■□□□□ 0.52
USHBP1-210ENST00000600286 MATR3P43243 847 aaKnown RBP eCLIP18.33■□□□□ 0.52
USHBP1-210ENST00000600286 CAMK4Q16566 473 aa18.33■□□□□ 0.52
USHBP1-210ENST00000600286 SKOR2Q2VWA4 1001 aaPredicted RBP18.33■□□□□ 0.52
USHBP1-210ENST00000600286 HERVK_113Q902F9 699 aa18.33■□□□□ 0.52
USHBP1-210ENST00000600286 KCNN1Q92952 543 aa18.33■□□□□ 0.52
USHBP1-210ENST00000600286 CCDC113Q9H0I3 377 aa18.33■□□□□ 0.52
USHBP1-210ENST00000600286 CLSTN2Q9H4D0 955 aa18.33■□□□□ 0.52
USHBP1-210ENST00000600286 RGS18Q9NS28 235 aa18.33■□□□□ 0.52
USHBP1-210ENST00000600286 LRFN2Q9ULH4 789 aa18.33■□□□□ 0.52
USHBP1-210ENST00000600286 PCDHA5Q9Y5H7 936 aa18.33■□□□□ 0.52
USHBP1-210ENST00000600286 SLC4A7Q9Y6M7 1214 aa18.33■□□□□ 0.52
USHBP1-210ENST00000600286 A0A0C4DFX4 3053 aa18.33■□□□□ 0.52
USHBP1-210ENST00000600286 ADGRA3Q8IWK6 1321 aa18.32■□□□□ 0.52
USHBP1-210ENST00000600286 CNTNAP2Q9UHC6 1331 aa18.32■□□□□ 0.52
USHBP1-210ENST00000600286 ENPP3O14638 875 aa18.32■□□□□ 0.52
USHBP1-210ENST00000600286 EIF3DO15371 548 aaKnown RBP eCLIP18.32■□□□□ 0.52
USHBP1-210ENST00000600286 KLRC4O43908 158 aa18.32■□□□□ 0.52
USHBP1-210ENST00000600286 TSPAN1O60635 241 aa18.32■□□□□ 0.52
USHBP1-210ENST00000600286 RHOBTB3O94955 611 aa18.32■□□□□ 0.52
USHBP1-210ENST00000600286 LIG4P49917 911 aa18.32■□□□□ 0.52
USHBP1-210ENST00000600286 RAB27AP51159 221 aa18.32■□□□□ 0.52
USHBP1-210ENST00000600286 L1TD1Q5T7N2 865 aaKnown RBP18.32■□□□□ 0.52
USHBP1-210ENST00000600286 ATF7IP2Q5U623 682 aa18.32■□□□□ 0.52
USHBP1-210ENST00000600286 SLC24A5Q71RS6 500 aa18.32■□□□□ 0.52
USHBP1-210ENST00000600286 C16orf59Q7L2K0 433 aa18.32■□□□□ 0.52
USHBP1-210ENST00000600286 RNPC3Q96LT9 517 aaKnown RBP18.32■□□□□ 0.52
USHBP1-210ENST00000600286 OSBPL7Q9BZF2 842 aa18.32■□□□□ 0.52
USHBP1-210ENST00000600286 TSPYL2Q9H2G4 693 aaPredicted RBP18.32■□□□□ 0.52
USHBP1-210ENST00000600286 SLC39A2Q9NP94 309 aa18.32■□□□□ 0.52
USHBP1-210ENST00000600286 A0A1B0GUA9 196 aa18.31■□□□□ 0.52
USHBP1-210ENST00000600286 HNRNPDLO14979 420 aaKnown RBP18.31■□□□□ 0.52
USHBP1-210ENST00000600286 ARF4P18085 180 aaPredicted RBP18.31■□□□□ 0.52
USHBP1-210ENST00000600286 EPHB4P54760 987 aa18.31■□□□□ 0.52
USHBP1-210ENST00000600286 STIM1Q13586 685 aa18.31■□□□□ 0.52
USHBP1-210ENST00000600286 AMHR2Q16671 573 aa18.31■□□□□ 0.52
USHBP1-210ENST00000600286 ZC2HC1CQ53FD0 456 aaPredicted RBP18.31■□□□□ 0.52
USHBP1-210ENST00000600286 SLC27A1Q6PCB7 646 aa18.31■□□□□ 0.52
USHBP1-210ENST00000600286 ZPBP2Q6X784 338 aa18.31■□□□□ 0.52
USHBP1-210ENST00000600286 GPT2Q8TD30 523 aa18.31■□□□□ 0.52
USHBP1-210ENST00000600286 PGBD4Q96DM1 585 aa18.31■□□□□ 0.52
USHBP1-210ENST00000600286 CPB2Q96IY4 423 aa18.31■□□□□ 0.52
USHBP1-210ENST00000600286 ACO2Q99798 780 aaKnown RBP18.31■□□□□ 0.52
USHBP1-210ENST00000600286 KIAA1468Q9P260 1216 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms