RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 TIPINQ9BVW5 301 aa16.8■□□□□ 0.28
LIG1-219ENST00000600055 FZD8Q9H461 694 aa16.8■□□□□ 0.28
LIG1-219ENST00000600055 PRMT7Q9NVM4 692 aaPredicted RBP16.8■□□□□ 0.28
LIG1-219ENST00000600055 RNF216Q9NWF9 866 aaPredicted RBP16.8■□□□□ 0.28
LIG1-219ENST00000600055 RCOR1Q9UKL0 485 aa16.8■□□□□ 0.28
LIG1-219ENST00000600055 CFAP45Q9UL16 551 aa16.8■□□□□ 0.28
LIG1-219ENST00000600055 PCDHA7Q9UN72 937 aa16.8■□□□□ 0.28
LIG1-219ENST00000600055 PCDHB2Q9Y5E7 798 aa16.8■□□□□ 0.28
LIG1-219ENST00000600055 LPXNO60711 386 aa16.79■□□□□ 0.28
LIG1-219ENST00000600055 PRKCBP05771 671 aa16.79■□□□□ 0.28
LIG1-219ENST00000600055 NCLP19338 710 aaKnown RBP16.79■□□□□ 0.28
LIG1-219ENST00000600055 AXLP30530 894 aa16.79■□□□□ 0.28
LIG1-219ENST00000600055 CTNNB1P35222 781 aa16.79■□□□□ 0.28
LIG1-219ENST00000600055 ME1P48163 572 aa16.79■□□□□ 0.28
LIG1-219ENST00000600055 DMP1Q13316 513 aaPredicted RBP16.79■□□□□ 0.28
LIG1-219ENST00000600055 FAM187BQ17R55 369 aa16.79■□□□□ 0.28
LIG1-219ENST00000600055 NOTUMQ6P988 496 aa16.79■□□□□ 0.28
LIG1-219ENST00000600055 PDILTQ8N807 584 aa16.79■□□□□ 0.28
LIG1-219ENST00000600055 SMG8Q8ND04 991 aaKnown RBP16.79■□□□□ 0.28
LIG1-219ENST00000600055 FBXO22Q8NEZ5 403 aa16.79■□□□□ 0.28
LIG1-219ENST00000600055 CLP1Q92989 425 aaKnown RBP16.79■□□□□ 0.28
LIG1-219ENST00000600055 REEP2Q9BRK0 252 aa16.79■□□□□ 0.28
LIG1-219ENST00000600055 TMEM117Q9H0C3 514 aa16.79■□□□□ 0.28
LIG1-219ENST00000600055 KCND2Q9NZV8 630 aa16.79■□□□□ 0.28
LIG1-219ENST00000600055 STK17AQ9UEE5 414 aa16.79■□□□□ 0.28
LIG1-219ENST00000600055 SLC16A4O15374 487 aa16.78■□□□□ 0.28
LIG1-219ENST00000600055 ZNF623O75123 536 aa16.78■□□□□ 0.28
LIG1-219ENST00000600055 SKIP12755 728 aa16.78■□□□□ 0.28
LIG1-219ENST00000600055 PLS3P13797 630 aa16.78■□□□□ 0.28
LIG1-219ENST00000600055 BMPR1AP36894 532 aa16.78■□□□□ 0.28
LIG1-219ENST00000600055 RAB27AP51159 221 aa16.78■□□□□ 0.28
LIG1-219ENST00000600055 NCBP1Q09161 790 aaKnown RBP16.78■□□□□ 0.28
LIG1-219ENST00000600055 GIT2Q14161 759 aa16.78■□□□□ 0.28
LIG1-219ENST00000600055 MAPK6Q16659 721 aa16.78■□□□□ 0.28
LIG1-219ENST00000600055 LRRC55Q6ZSA7 311 aa16.78■□□□□ 0.28
LIG1-219ENST00000600055 TAS1R3Q7RTX0 852 aa16.78■□□□□ 0.28
LIG1-219ENST00000600055 MRPL10Q7Z7H8 261 aaKnown RBP16.78■□□□□ 0.28
LIG1-219ENST00000600055 KMT5AQ9NQR1 393 aa16.78■□□□□ 0.28
LIG1-219ENST00000600055 TYW1Q9NV66 732 aaKnown RBP16.78■□□□□ 0.28
LIG1-219ENST00000600055 CDH23Q9H251 3354 aa16.78■□□□□ 0.28
LIG1-219ENST00000600055 CNTNAP2Q9UHC6 1331 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 A0A1B0GUA9 196 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 K7ERI5 159 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 ACKR2O00590 384 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 HOXA2O43364 376 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 NPTXRO95502 500 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 KRT18P05783 430 aaKnown RBP16.77■□□□□ 0.28
LIG1-219ENST00000600055 STAT6P42226 847 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 EFNA5P52803 228 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 KRT85P78386 507 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 PRPF4BQ13523 1007 aaKnown RBP16.77■□□□□ 0.28
LIG1-219ENST00000600055 NT5DC1Q5TFE4 455 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 EEF1DP3Q658K8 133 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 AGMOQ6ZNB7 445 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 CCDC73Q6ZRK6 1079 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 ABI1Q8IZP0 508 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 LEO1Q8WVC0 666 aaPredicted RBP16.77■□□□□ 0.28
LIG1-219ENST00000600055 CCDC51Q96ER9 411 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 PRIMPOLQ96LW4 560 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 SAMD11Q96NU1 681 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 RNF39Q9H2S5 420 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 PDZD7Q9H5P4 517 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 CWH43Q9H720 699 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 C17orf75Q9HAS0 396 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 ARHGAP28Q9P2N2 729 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 HES2Q9Y543 173 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 IPPQ9Y573 584 aa16.77■□□□□ 0.28
LIG1-219ENST00000600055 MYMKA6NI61 221 aa16.76■□□□□ 0.27
LIG1-219ENST00000600055 OFD1O75665 1012 aa16.76■□□□□ 0.27
LIG1-219ENST00000600055 FAM13AO94988 1023 aa16.76■□□□□ 0.27
LIG1-219ENST00000600055 AFF1P51825 1210 aaKnown RBP16.76■□□□□ 0.27
LIG1-219ENST00000600055 GPM6BQ13491 265 aa16.76■□□□□ 0.27
LIG1-219ENST00000600055 TMEM132AQ24JP5 1023 aa16.76■□□□□ 0.27
LIG1-219ENST00000600055 SPOUT1Q5T280 376 aaKnown RBP16.76■□□□□ 0.27
LIG1-219ENST00000600055 SLC27A1Q6PCB7 646 aa16.76■□□□□ 0.27
LIG1-219ENST00000600055 SV2BQ7L1I2 683 aa16.76■□□□□ 0.27
LIG1-219ENST00000600055 DYMQ7RTS9 669 aa16.76■□□□□ 0.27
LIG1-219ENST00000600055 TMEM161BQ8NDZ6 487 aa16.76■□□□□ 0.27
LIG1-219ENST00000600055 SPIRE2Q8WWL2 714 aa16.76■□□□□ 0.27
LIG1-219ENST00000600055 PGBD4Q96DM1 585 aa16.76■□□□□ 0.27
LIG1-219ENST00000600055 SPATA32Q96LK8 384 aa16.76■□□□□ 0.27
LIG1-219ENST00000600055 NTPCRQ9BSD7 190 aaKnown RBP16.76■□□□□ 0.27
LIG1-219ENST00000600055 APOL6Q9BWW8 343 aa16.76■□□□□ 0.27
LIG1-219ENST00000600055 NXF3Q9H4D5 531 aaKnown RBP16.76■□□□□ 0.27
LIG1-219ENST00000600055 ZHX3Q9H4I2 956 aa16.76■□□□□ 0.27
LIG1-219ENST00000600055 TMEM134Q9H6X4 195 aa16.76■□□□□ 0.27
LIG1-219ENST00000600055 ODF2LQ9ULJ1 636 aa16.76■□□□□ 0.27
LIG1-219ENST00000600055 INPP5FQ9Y2H2 1132 aa16.76■□□□□ 0.27
LIG1-219ENST00000600055 MTCH2Q9Y6C9 303 aa16.76■□□□□ 0.27
LIG1-219ENST00000600055 PHLPP2Q6ZVD8 1323 aa16.75■□□□□ 0.27
LIG1-219ENST00000600055 C5orf67F2Z3F1 127 aa16.75■□□□□ 0.27
LIG1-219ENST00000600055 H3BNC9 293 aa16.75■□□□□ 0.27
LIG1-219ENST00000600055 N4BP3O15049 544 aa16.75■□□□□ 0.27
LIG1-219ENST00000600055 ITGA4P13612 1032 aa16.75■□□□□ 0.27
LIG1-219ENST00000600055 ZNF131P52739 623 aa16.75■□□□□ 0.27
LIG1-219ENST00000600055 CCDC85BQ15834 202 aaPredicted RBP16.75■□□□□ 0.27
LIG1-219ENST00000600055 E2F4Q16254 413 aa16.75■□□□□ 0.27
LIG1-219ENST00000600055 RESP18Q5W5W9 173 aa16.75■□□□□ 0.27
LIG1-219ENST00000600055 MICALL1Q8N3F8 863 aa16.75■□□□□ 0.27
LIG1-219ENST00000600055 MYCT1Q8N699 235 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms