RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 AXLP30530 894 aa21.54■■□□□ 1.04
SHKBP1-221ENST00000599833 KRT85P78386 507 aa21.54■■□□□ 1.04
SHKBP1-221ENST00000599833 ADGRE1Q14246 886 aa21.54■■□□□ 1.04
SHKBP1-221ENST00000599833 DHX8Q14562 1220 aaKnown RBP21.54■■□□□ 1.04
SHKBP1-221ENST00000599833 PPP2R5AQ15172 486 aa21.54■■□□□ 1.04
SHKBP1-221ENST00000599833 MRPL10Q7Z7H8 261 aaKnown RBP21.54■■□□□ 1.04
SHKBP1-221ENST00000599833 CMTR2Q8IYT2 770 aaKnown RBP21.54■■□□□ 1.04
SHKBP1-221ENST00000599833 SMG8Q8ND04 991 aaKnown RBP21.54■■□□□ 1.04
SHKBP1-221ENST00000599833 SPIRE2Q8WWL2 714 aa21.54■■□□□ 1.04
SHKBP1-221ENST00000599833 PRIMPOLQ96LW4 560 aa21.54■■□□□ 1.04
SHKBP1-221ENST00000599833 C17orf80Q9BSJ5 609 aa21.54■■□□□ 1.04
SHKBP1-221ENST00000599833 C2orf40Q9H1Z8 148 aa21.54■■□□□ 1.04
SHKBP1-221ENST00000599833 PRMT7Q9NVM4 692 aaPredicted RBP21.54■■□□□ 1.04
SHKBP1-221ENST00000599833 DACT1Q9NYF0 836 aa21.54■■□□□ 1.04
SHKBP1-221ENST00000599833 HCSTQ9UBK5 93 aa21.54■■□□□ 1.04
SHKBP1-221ENST00000599833 CCDC39Q9UFE4 941 aa21.54■■□□□ 1.04
SHKBP1-221ENST00000599833 ODF2LQ9ULJ1 636 aa21.54■■□□□ 1.04
SHKBP1-221ENST00000599833 PCDHB7Q9Y5E2 793 aa21.54■■□□□ 1.04
SHKBP1-221ENST00000599833 ME1P48163 572 aa21.53■■□□□ 1.04
SHKBP1-221ENST00000599833 NT5DC1Q5TFE4 455 aa21.53■■□□□ 1.04
SHKBP1-221ENST00000599833 CCDC73Q6ZRK6 1079 aa21.53■■□□□ 1.04
SHKBP1-221ENST00000599833 LRRC55Q6ZSA7 311 aa21.53■■□□□ 1.04
SHKBP1-221ENST00000599833 PDILTQ8N807 584 aa21.53■■□□□ 1.04
SHKBP1-221ENST00000599833 TMEM161BQ8NDZ6 487 aa21.53■■□□□ 1.04
SHKBP1-221ENST00000599833 DEPTORQ8TB45 409 aa21.53■■□□□ 1.04
SHKBP1-221ENST00000599833 IFT74Q96LB3 600 aa21.53■■□□□ 1.04
SHKBP1-221ENST00000599833 CASD1Q96PB1 797 aa21.53■■□□□ 1.04
SHKBP1-221ENST00000599833 PRDM12Q9H4Q4 367 aa21.53■■□□□ 1.04
SHKBP1-221ENST00000599833 CERS4Q9HA82 394 aa21.53■■□□□ 1.04
SHKBP1-221ENST00000599833 MRPL42Q9Y6G3 142 aaKnown RBP21.53■■□□□ 1.04
SHKBP1-221ENST00000599833 FAM237AA0A1B0GTK4 181 aa21.52■■□□□ 1.04
SHKBP1-221ENST00000599833 RFXAPO00287 272 aa21.52■■□□□ 1.04
SHKBP1-221ENST00000599833 ACKR2O00590 384 aa21.52■■□□□ 1.04
SHKBP1-221ENST00000599833 ERLIN2O94905 339 aa21.52■■□□□ 1.04
SHKBP1-221ENST00000599833 EOMESO95936 686 aa21.52■■□□□ 1.04
SHKBP1-221ENST00000599833 TXLNAP40222 546 aa21.52■■□□□ 1.04
SHKBP1-221ENST00000599833 NCKAP1LP55160 1127 aa21.52■■□□□ 1.04
SHKBP1-221ENST00000599833 TWF2Q6IBS0 349 aaKnown RBP21.52■■□□□ 1.04
SHKBP1-221ENST00000599833 AGMOQ6ZNB7 445 aa21.52■■□□□ 1.04
SHKBP1-221ENST00000599833 CDR2LQ86X02 465 aaPredicted RBP21.52■■□□□ 1.04
SHKBP1-221ENST00000599833 ZBTB8OSQ8IWT0 167 aa21.52■■□□□ 1.04
SHKBP1-221ENST00000599833 RASSF8Q8NHQ8 419 aa21.52■■□□□ 1.04
SHKBP1-221ENST00000599833 LPPQ93052 612 aa21.52■■□□□ 1.04
SHKBP1-221ENST00000599833 CCDC51Q96ER9 411 aa21.52■■□□□ 1.04
SHKBP1-221ENST00000599833 PDZD7Q9H5P4 517 aa21.52■■□□□ 1.04
SHKBP1-221ENST00000599833 TMEM134Q9H6X4 195 aa21.52■■□□□ 1.04
SHKBP1-221ENST00000599833 KBTBD4Q9NVX7 518 aa21.52■■□□□ 1.04
SHKBP1-221ENST00000599833 HPSEQ9Y251 543 aa21.52■■□□□ 1.04
SHKBP1-221ENST00000599833 PCDHB2Q9Y5E7 798 aa21.52■■□□□ 1.04
SHKBP1-221ENST00000599833 ABLIM1O14639 778 aa21.51■■□□□ 1.03
SHKBP1-221ENST00000599833 SLC16A4O15374 487 aa21.51■■□□□ 1.03
SHKBP1-221ENST00000599833 PRKCBP05771 671 aa21.51■■□□□ 1.03
SHKBP1-221ENST00000599833 STAT6P42226 847 aa21.51■■□□□ 1.03
SHKBP1-221ENST00000599833 EFNA5P52803 228 aa21.51■■□□□ 1.03
SHKBP1-221ENST00000599833 DMP1Q13316 513 aaPredicted RBP21.51■■□□□ 1.03
SHKBP1-221ENST00000599833 EEF1DP3Q658K8 133 aa21.51■■□□□ 1.03
SHKBP1-221ENST00000599833 ADALQ6DHV7 355 aa21.51■■□□□ 1.03
SHKBP1-221ENST00000599833 NOTUMQ6P988 496 aa21.51■■□□□ 1.03
SHKBP1-221ENST00000599833 MYLIPQ8WY64 445 aa21.51■■□□□ 1.03
SHKBP1-221ENST00000599833 DDX12PQ92771 950 aa21.51■■□□□ 1.03
SHKBP1-221ENST00000599833 SPATA32Q96LK8 384 aa21.51■■□□□ 1.03
SHKBP1-221ENST00000599833 TGS1Q96RS0 853 aaKnown RBP21.51■■□□□ 1.03
SHKBP1-221ENST00000599833 RNF39Q9H2S5 420 aa21.51■■□□□ 1.03
SHKBP1-221ENST00000599833 CWH43Q9H720 699 aa21.51■■□□□ 1.03
SHKBP1-221ENST00000599833 GDPD2Q9HCC8 539 aa21.51■■□□□ 1.03
SHKBP1-221ENST00000599833 ATP6V1DQ9Y5K8 247 aa21.51■■□□□ 1.03
SHKBP1-221ENST00000599833 PHLPP2Q6ZVD8 1323 aa21.51■■□□□ 1.03
SHKBP1-221ENST00000599833 PLXNA4Q9HCM2 1894 aa21.5■■□□□ 1.03
SHKBP1-221ENST00000599833 PRRC2BQ5JSZ5 2229 aaKnown RBP21.5■■□□□ 1.03
SHKBP1-221ENST00000599833 FRMD3A2A2Y4 597 aa21.5■■□□□ 1.03
SHKBP1-221ENST00000599833 C5orf67F2Z3F1 127 aa21.5■■□□□ 1.03
SHKBP1-221ENST00000599833 MAPTP10636 758 aaKnown RBP21.5■■□□□ 1.03
SHKBP1-221ENST00000599833 NCLP19338 710 aaKnown RBP21.5■■□□□ 1.03
SHKBP1-221ENST00000599833 IBSPP21815 317 aaPredicted RBP21.5■■□□□ 1.03
SHKBP1-221ENST00000599833 RAB27AP51159 221 aa21.5■■□□□ 1.03
SHKBP1-221ENST00000599833 AFF1P51825 1210 aaKnown RBP21.5■■□□□ 1.03
SHKBP1-221ENST00000599833 BTG3Q14201 252 aaPredicted RBP21.5■■□□□ 1.03
SHKBP1-221ENST00000599833 MAPK6Q16659 721 aa21.5■■□□□ 1.03
SHKBP1-221ENST00000599833 PAN2Q504Q3 1202 aaKnown RBP21.5■■□□□ 1.03
SHKBP1-221ENST00000599833 EPC2Q52LR7 807 aa21.5■■□□□ 1.03
SHKBP1-221ENST00000599833 TMEM117Q9H0C3 514 aa21.5■■□□□ 1.03
SHKBP1-221ENST00000599833 PTPRHQ9HD43 1115 aa21.5■■□□□ 1.03
SHKBP1-221ENST00000599833 KMT5AQ9NQR1 393 aa21.5■■□□□ 1.03
SHKBP1-221ENST00000599833 LRFN2Q9ULH4 789 aa21.5■■□□□ 1.03
SHKBP1-221ENST00000599833 CIZ1Q9ULV3 898 aaPredicted RBP21.5■■□□□ 1.03
SHKBP1-221ENST00000599833 IPPQ9Y573 584 aa21.5■■□□□ 1.03
SHKBP1-221ENST00000599833 CCDC169A6NNP5 214 aa21.49■■□□□ 1.03
SHKBP1-221ENST00000599833 TBKBP1A7MCY6 615 aa21.49■■□□□ 1.03
SHKBP1-221ENST00000599833 OFD1O75665 1012 aa21.49■■□□□ 1.03
SHKBP1-221ENST00000599833 CMA1P23946 247 aa21.49■■□□□ 1.03
SHKBP1-221ENST00000599833 PRPF4BQ13523 1007 aaKnown RBP21.49■■□□□ 1.03
SHKBP1-221ENST00000599833 SV2BQ7L1I2 683 aa21.49■■□□□ 1.03
SHKBP1-221ENST00000599833 FIBCD1Q8N539 461 aa21.49■■□□□ 1.03
SHKBP1-221ENST00000599833 ARNTL2Q8WYA1 636 aa21.49■■□□□ 1.03
SHKBP1-221ENST00000599833 SCAND2PQ9GZW5 306 aaPredicted RBP21.49■■□□□ 1.03
SHKBP1-221ENST00000599833 HES2Q9Y543 173 aa21.49■■□□□ 1.03
SHKBP1-221ENST00000599833 INPPL1O15357 1258 aa21.48■■□□□ 1.03
SHKBP1-221ENST00000599833 POLR2DO15514 142 aaKnown RBP21.48■■□□□ 1.03
SHKBP1-221ENST00000599833 SKIP12755 728 aa21.48■■□□□ 1.03
SHKBP1-221ENST00000599833 PFKFB1P16118 471 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms