RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 NLRC5Q86WI3 1866 aa16.73■□□□□ 0.27
LIG1-215ENST00000597901 GALTP07902 379 aa16.73■□□□□ 0.27
LIG1-215ENST00000597901 CYP11B2P19099 503 aa16.73■□□□□ 0.27
LIG1-215ENST00000597901 NCLP19338 710 aaKnown RBP16.73■□□□□ 0.27
LIG1-215ENST00000597901 MUTP22033 750 aa16.73■□□□□ 0.27
LIG1-215ENST00000597901 GJB2P29033 226 aa16.73■□□□□ 0.27
LIG1-215ENST00000597901 CCT6AP40227 531 aaKnown RBP16.73■□□□□ 0.27
LIG1-215ENST00000597901 AFF1P51825 1210 aaKnown RBP16.73■□□□□ 0.27
LIG1-215ENST00000597901 MBTD1Q05BQ5 628 aa16.73■□□□□ 0.27
LIG1-215ENST00000597901 ECM1Q16610 540 aa16.73■□□□□ 0.27
LIG1-215ENST00000597901 AMHR2Q16671 573 aa16.73■□□□□ 0.27
LIG1-215ENST00000597901 PLPP4Q5VZY2 271 aa16.73■□□□□ 0.27
LIG1-215ENST00000597901 MCTP1Q6DN14 999 aa16.73■□□□□ 0.27
LIG1-215ENST00000597901 POTEGQ6S5H5 508 aa16.73■□□□□ 0.27
LIG1-215ENST00000597901 PADI6Q6TGC4 694 aa16.73■□□□□ 0.27
LIG1-215ENST00000597901 TMC7Q7Z402 723 aa16.73■□□□□ 0.27
LIG1-215ENST00000597901 MRPL43Q8N983 215 aaKnown RBP16.73■□□□□ 0.27
LIG1-215ENST00000597901 SMG8Q8ND04 991 aaKnown RBP16.73■□□□□ 0.27
LIG1-215ENST00000597901 MCPH1Q8NEM0 835 aa16.73■□□□□ 0.27
LIG1-215ENST00000597901 KHSRPQ92945 711 aaKnown RBP eCLIP16.73■□□□□ 0.27
LIG1-215ENST00000597901 CPB2Q96IY4 423 aa16.73■□□□□ 0.27
LIG1-215ENST00000597901 TBC1D32Q96NH3 1257 aa16.73■□□□□ 0.27
LIG1-215ENST00000597901 CDCA3Q99618 268 aaPredicted RBP16.73■□□□□ 0.27
LIG1-215ENST00000597901 ENTPD7Q9NQZ7 604 aa16.73■□□□□ 0.27
LIG1-215ENST00000597901 KANSL3Q9P2N6 904 aa16.73■□□□□ 0.27
LIG1-215ENST00000597901 HIDE1A8MVS5 230 aa16.72■□□□□ 0.27
LIG1-215ENST00000597901 EYA4O95677 639 aa16.72■□□□□ 0.27
LIG1-215ENST00000597901 GLP2RO95838 553 aa16.72■□□□□ 0.27
LIG1-215ENST00000597901 ALDH2P05091 517 aa16.72■□□□□ 0.27
LIG1-215ENST00000597901 ITGA4P13612 1032 aa16.72■□□□□ 0.27
LIG1-215ENST00000597901 RBM10P98175 930 aaKnown RBP16.72■□□□□ 0.27
LIG1-215ENST00000597901 RNASELQ05823 741 aaKnown RBP16.72■□□□□ 0.27
LIG1-215ENST00000597901 SMAD2Q15796 467 aaKnown RBP16.72■□□□□ 0.27
LIG1-215ENST00000597901 IL17AQ16552 155 aa16.72■□□□□ 0.27
LIG1-215ENST00000597901 NOTUMQ6P988 496 aa16.72■□□□□ 0.27
LIG1-215ENST00000597901 ZNF280BQ86YH2 543 aa16.72■□□□□ 0.27
LIG1-215ENST00000597901 CCDC51Q96ER9 411 aa16.72■□□□□ 0.27
LIG1-215ENST00000597901 EIF2AQ9BY44 585 aaKnown RBP16.72■□□□□ 0.27
LIG1-215ENST00000597901 CSRNP2Q9H175 543 aa16.72■□□□□ 0.27
LIG1-215ENST00000597901 RNF39Q9H2S5 420 aa16.72■□□□□ 0.27
LIG1-215ENST00000597901 RSAD1Q9HA92 442 aa16.72■□□□□ 0.27
LIG1-215ENST00000597901 UBN1Q9NPG3 1134 aa16.72■□□□□ 0.27
LIG1-215ENST00000597901 PRKAG3Q9UGI9 489 aa16.72■□□□□ 0.27
LIG1-215ENST00000597901 FNDC1Q4ZHG4 1894 aaPredicted RBP16.71■□□□□ 0.27
LIG1-215ENST00000597901 ARHGEF35A5YM69 484 aa16.71■□□□□ 0.27
LIG1-215ENST00000597901 CARNS1A5YM72 827 aa16.71■□□□□ 0.27
LIG1-215ENST00000597901 C19orf67A6NJJ6 358 aa16.71■□□□□ 0.27
LIG1-215ENST00000597901 ZC3H11AO75152 810 aaKnown RBP eCLIP16.71■□□□□ 0.27
LIG1-215ENST00000597901 DDHD2O94830 711 aa16.71■□□□□ 0.27
LIG1-215ENST00000597901 CXCL14O95715 111 aa16.71■□□□□ 0.27
LIG1-215ENST00000597901 ARF4P18085 180 aaPredicted RBP16.71■□□□□ 0.27
LIG1-215ENST00000597901 COASYQ13057 564 aa16.71■□□□□ 0.27
LIG1-215ENST00000597901 SMAD4Q13485 552 aaKnown RBP16.71■□□□□ 0.27
LIG1-215ENST00000597901 KCNC3Q14003 757 aa16.71■□□□□ 0.27
LIG1-215ENST00000597901 HAUS3Q68CZ6 603 aa16.71■□□□□ 0.27
LIG1-215ENST00000597901 TMEM184AQ6ZMB5 413 aa16.71■□□□□ 0.27
LIG1-215ENST00000597901 IGSF22Q8N9C0 903 aa16.71■□□□□ 0.27
LIG1-215ENST00000597901 VN1R2Q8NFZ6 395 aa16.71■□□□□ 0.27
LIG1-215ENST00000597901 URGCPQ8TCY9 931 aa16.71■□□□□ 0.27
LIG1-215ENST00000597901 TMEM169Q96HH4 297 aa16.71■□□□□ 0.27
LIG1-215ENST00000597901 IGSF21Q96ID5 467 aa16.71■□□□□ 0.27
LIG1-215ENST00000597901 GBP3Q9H0R5 595 aa16.71■□□□□ 0.27
LIG1-215ENST00000597901 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.71■□□□□ 0.27
LIG1-215ENST00000597901 DNAJB4Q9UDY4 337 aa16.71■□□□□ 0.27
LIG1-215ENST00000597901 BARX2Q9UMQ3 279 aaPredicted RBP16.71■□□□□ 0.27
LIG1-215ENST00000597901 KIAA1024Q9UPX6 916 aa16.71■□□□□ 0.27
LIG1-215ENST00000597901 IPPQ9Y573 584 aa16.71■□□□□ 0.27
LIG1-215ENST00000597901 STK24Q9Y6E0 443 aa16.71■□□□□ 0.27
LIG1-215ENST00000597901 CNTNAP2Q9UHC6 1331 aa16.7■□□□□ 0.26
LIG1-215ENST00000597901 A0A1B0GUA9 196 aa16.7■□□□□ 0.26
LIG1-215ENST00000597901 C2orf71A6NGG8 1288 aa16.7■□□□□ 0.26
LIG1-215ENST00000597901 LRRIQ4A6NIV6 560 aa16.7■□□□□ 0.26
LIG1-215ENST00000597901 PI4K2BG5E9Z4 385 aa16.7■□□□□ 0.26
LIG1-215ENST00000597901 H3BQV1 296 aa16.7■□□□□ 0.26
LIG1-215ENST00000597901 LAD1O00515 517 aa16.7■□□□□ 0.26
LIG1-215ENST00000597901 B4GALT5O43286 388 aa16.7■□□□□ 0.26
LIG1-215ENST00000597901 POMCP01189 267 aa16.7■□□□□ 0.26
LIG1-215ENST00000597901 SLC11A1P49279 550 aa16.7■□□□□ 0.26
LIG1-215ENST00000597901 ZP2Q05996 745 aa16.7■□□□□ 0.26
LIG1-215ENST00000597901 SMC1AQ14683 1233 aaKnown RBP16.7■□□□□ 0.26
LIG1-215ENST00000597901 RILPL1Q5EBL4 403 aa16.7■□□□□ 0.26
LIG1-215ENST00000597901 TMEM31Q5JXX7 168 aa16.7■□□□□ 0.26
LIG1-215ENST00000597901 DTHD1Q6ZMT9 781 aa16.7■□□□□ 0.26
LIG1-215ENST00000597901 DDX53Q86TM3 631 aaKnown RBP16.7■□□□□ 0.26
LIG1-215ENST00000597901 TMEM173Q86WV6 379 aaPredicted RBP16.7■□□□□ 0.26
LIG1-215ENST00000597901 ADHFE1Q8IWW8 467 aa16.7■□□□□ 0.26
LIG1-215ENST00000597901 RAB34Q9BZG1 259 aa16.7■□□□□ 0.26
LIG1-215ENST00000597901 FZD8Q9H461 694 aa16.7■□□□□ 0.26
LIG1-215ENST00000597901 POLD4Q9HCU8 107 aa16.7■□□□□ 0.26
LIG1-215ENST00000597901 MIOSQ9NXC5 875 aa16.7■□□□□ 0.26
LIG1-215ENST00000597901 SMC3Q9UQE7 1217 aa16.7■□□□□ 0.26
LIG1-215ENST00000597901 HES2Q9Y543 173 aa16.7■□□□□ 0.26
LIG1-215ENST00000597901 FSD2A1L4K1 749 aa16.69■□□□□ 0.26
LIG1-215ENST00000597901 B4GALT3O60512 393 aa16.69■□□□□ 0.26
LIG1-215ENST00000597901 CDC25AP30304 524 aa16.69■□□□□ 0.26
LIG1-215ENST00000597901 PRPHP41219 470 aa16.69■□□□□ 0.26
LIG1-215ENST00000597901 BMS1Q14692 1282 aaKnown RBP16.69■□□□□ 0.26
LIG1-215ENST00000597901 LARP1BQ659C4 914 aaKnown RBP16.69■□□□□ 0.26
LIG1-215ENST00000597901 CDR2LQ86X02 465 aaPredicted RBP16.69■□□□□ 0.26
LIG1-215ENST00000597901 VPS52Q8N1B4 723 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms