RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 STK38LQ9Y2H1 464 aa16.44■□□□□ 0.22
UPF1-204ENST00000596842 CHUKO15111 745 aa16.44■□□□□ 0.22
UPF1-204ENST00000596842 ELF1P32519 619 aa16.44■□□□□ 0.22
UPF1-204ENST00000596842 CAPN12Q6ZSI9 719 aa16.44■□□□□ 0.22
UPF1-204ENST00000596842 ARHGEF19Q8IW93 802 aa16.44■□□□□ 0.22
UPF1-204ENST00000596842 CCDC17Q96LX7 622 aa16.44■□□□□ 0.22
UPF1-204ENST00000596842 COA1Q9GZY4 146 aa16.44■□□□□ 0.22
UPF1-204ENST00000596842 CYP26A1O43174 497 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 TMEM253P0C7T8 217 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 DPY19L2P1Q6NXN4 242 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 EPM2AIP1Q7L775 607 aaPredicted RBP16.43■□□□□ 0.22
UPF1-204ENST00000596842 ATP8B4Q8TF62 1192 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 FAM20AQ96MK3 541 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 AGPAT1Q99943 283 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 WDR18Q9BV38 432 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 SPATS2LQ9NUQ6 558 aaKnown RBP16.43■□□□□ 0.22
UPF1-204ENST00000596842 PI4KBQ9UBF8 816 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 TCEAL9Q9UHQ7 104 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 USP21Q9UK80 565 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 CLRN2A0PK11 232 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 CCDC169A6NNP5 214 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 TCP10L2B9ZVM9 353 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 DDX3YO15523 660 aaKnown RBP16.43■□□□□ 0.22
UPF1-204ENST00000596842 SORBS3O60504 671 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 BCRP11274 1271 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 PTENP60484 403 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 SP4Q02446 784 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 CETN1Q12798 172 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 DAB2IPQ5VWQ8 1189 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 CBWD1Q9BRT8 395 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 STXBP5LQ9Y2K9 1186 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 GSTTP1A0A1W2PQM5 241 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 HIP1RO75146 1068 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 ARP10275 920 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 SMTNP53814 917 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 DDR1Q08345 913 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 CALCOCO2Q13137 446 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 MAPK7Q13164 816 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 TNIP1Q15025 636 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 AGBL2Q5U5Z8 902 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 SEPT14Q6ZU15 432 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 FUKQ8N0W3 1084 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 CPXCR1Q8N123 301 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 LXNQ9BS40 222 aa16.43■□□□□ 0.22
UPF1-204ENST00000596842 WRAP73Q9P2S5 460 aaPredicted RBP16.43■□□□□ 0.22
UPF1-204ENST00000596842 ANKRD63C9JTQ0 380 aa16.42■□□□□ 0.22
UPF1-204ENST00000596842 RASGRF2O14827 1237 aa16.42■□□□□ 0.22
UPF1-204ENST00000596842 SGPL1O95470 568 aa16.42■□□□□ 0.22
UPF1-204ENST00000596842 KRT5P13647 590 aa16.42■□□□□ 0.22
UPF1-204ENST00000596842 RBM26Q5T8P6 1007 aaKnown RBP16.42■□□□□ 0.22
UPF1-204ENST00000596842 ATG4AQ8WYN0 398 aa16.42■□□□□ 0.22
UPF1-204ENST00000596842 PWWP2AQ96N64 755 aa16.42■□□□□ 0.22
UPF1-204ENST00000596842 DDX23Q9BUQ8 820 aaKnown RBP16.42■□□□□ 0.22
UPF1-204ENST00000596842 ANKRD62A6NC57 917 aa16.42■□□□□ 0.22
UPF1-204ENST00000596842 PYGMP11217 842 aa16.42■□□□□ 0.22
UPF1-204ENST00000596842 BFSP1Q12934 665 aa16.42■□□□□ 0.22
UPF1-204ENST00000596842 HP1BP3Q5SSJ5 553 aaPredicted RBP16.42■□□□□ 0.22
UPF1-204ENST00000596842 CCDC50Q8IVM0 306 aa16.42■□□□□ 0.22
UPF1-204ENST00000596842 TATDN2Q93075 761 aa16.42■□□□□ 0.22
UPF1-204ENST00000596842 ZNF653Q96CK0 615 aa16.42■□□□□ 0.22
UPF1-204ENST00000596842 SAAL1Q96ER3 474 aa16.42■□□□□ 0.22
UPF1-204ENST00000596842 CSRNP1Q96S65 589 aa16.42■□□□□ 0.22
UPF1-204ENST00000596842 HEMGNQ9BXL5 484 aa16.42■□□□□ 0.22
UPF1-204ENST00000596842 PABPC3Q9H361 631 aaKnown RBP16.42■□□□□ 0.22
UPF1-204ENST00000596842 PRR12Q9ULL5 1215 aa16.42■□□□□ 0.22
UPF1-204ENST00000596842 CLDN3O15551 220 aa16.42■□□□□ 0.22
UPF1-204ENST00000596842 CREB1P16220 341 aa16.42■□□□□ 0.22
UPF1-204ENST00000596842 SREBF1P36956 1147 aa16.42■□□□□ 0.22
UPF1-204ENST00000596842 JAG1P78504 1218 aa16.42■□□□□ 0.22
UPF1-204ENST00000596842 STXBP4Q6ZWJ1 553 aa16.42■□□□□ 0.22
UPF1-204ENST00000596842 VAV3Q9UKW4 847 aa16.42■□□□□ 0.22
UPF1-204ENST00000596842 TPX2Q9ULW0 747 aaKnown RBP16.42■□□□□ 0.22
UPF1-204ENST00000596842 SLC16A3O15427 465 aaKnown RBP16.41■□□□□ 0.22
UPF1-204ENST00000596842 TRIM37O94972 964 aa16.41■□□□□ 0.22
UPF1-204ENST00000596842 ZNF720Q7Z2F6 126 aa16.41■□□□□ 0.22
UPF1-204ENST00000596842 SLFN11Q7Z7L1 901 aa16.41■□□□□ 0.22
UPF1-204ENST00000596842 RASGEF1CQ8N431 466 aa16.41■□□□□ 0.22
UPF1-204ENST00000596842 KIF2BQ8N4N8 673 aa16.41■□□□□ 0.22
UPF1-204ENST00000596842 ACER1Q8TDN7 264 aa16.41■□□□□ 0.22
UPF1-204ENST00000596842 CTNNAL1Q9UBT7 734 aa16.41■□□□□ 0.22
UPF1-204ENST00000596842 SMCHD1A6NHR9 2005 aa16.41■□□□□ 0.22
UPF1-204ENST00000596842 BTNL10A8MVZ5 291 aa16.41■□□□□ 0.22
UPF1-204ENST00000596842 PPP1R12AO14974 1030 aaPredicted RBP16.41■□□□□ 0.22
UPF1-204ENST00000596842 FOSP01100 380 aaPredicted RBP16.41■□□□□ 0.22
UPF1-204ENST00000596842 GAP43P17677 238 aa16.41■□□□□ 0.22
UPF1-204ENST00000596842 DRD4P21917 467 aa16.41■□□□□ 0.22
UPF1-204ENST00000596842 TTC27Q6P3X3 843 aa16.41■□□□□ 0.22
UPF1-204ENST00000596842 DCAF4Q8WV16 495 aa16.41■□□□□ 0.22
UPF1-204ENST00000596842 ZBTB10Q96DT7 871 aa16.41■□□□□ 0.22
UPF1-204ENST00000596842 SPDL1Q96EA4 605 aa16.41■□□□□ 0.22
UPF1-204ENST00000596842 CARD9Q9H257 536 aa16.41■□□□□ 0.22
UPF1-204ENST00000596842 GPRC5CQ9NQ84 441 aa16.41■□□□□ 0.22
UPF1-204ENST00000596842 FBXO28Q9NVF7 368 aa16.41■□□□□ 0.22
UPF1-204ENST00000596842 NOVP48745 357 aa16.41■□□□□ 0.22
UPF1-204ENST00000596842 PRELID2Q8N945 189 aa16.41■□□□□ 0.22
UPF1-204ENST00000596842 CCDC63Q8NA47 563 aa16.41■□□□□ 0.22
UPF1-204ENST00000596842 KIFC3Q9BVG8 833 aa16.41■□□□□ 0.22
UPF1-204ENST00000596842 A0A1W2PRG0 241 aa16.4■□□□□ 0.22
UPF1-204ENST00000596842 CES2O00748 559 aa16.4■□□□□ 0.22
UPF1-204ENST00000596842 KIAA0391O15091 583 aaKnown RBP16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms