RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 GAS2L1Q99501 681 aaPredicted RBP12.33□□□□□ -0.44
VRK3-210ENST00000596121 PANK2Q9BZ23 570 aa12.33□□□□□ -0.44
VRK3-210ENST00000596121 TYW1Q9NV66 732 aaKnown RBP12.33□□□□□ -0.44
VRK3-210ENST00000596121 DACT1Q9NYF0 836 aa12.33□□□□□ -0.44
VRK3-210ENST00000596121 A0A1B0GUA9 196 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 C5orf67F2Z3F1 127 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 H3BNC9 293 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 GRM6O15303 877 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 B4GALT3O60512 393 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 PPP6R2O75170 966 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 OFD1O75665 1012 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 ERLIN2O94905 339 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 YEATS4O95619 227 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 PDIA4P13667 645 aaKnown RBP12.32□□□□□ -0.44
VRK3-210ENST00000596121 DNAJB1P25685 340 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 CTNNB1P35222 781 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 DDIT3P35638 169 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 PEX3P56589 373 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 GPM6BQ13491 265 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 CAMK1Q14012 370 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 CCDC85BQ15834 202 aaPredicted RBP12.32□□□□□ -0.44
VRK3-210ENST00000596121 EEF1DP3Q658K8 133 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 SHC4Q6S5L8 630 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 GPBP1Q86WP2 473 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 DEPTORQ8TB45 409 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 REEP2Q9BRK0 252 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 TMEM117Q9H0C3 514 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 PRDM6Q9NQX0 595 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 RCOR1Q9UKL0 485 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 HES2Q9Y543 173 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 SPTBN5Q9NRC6 3674 aaKnown RBP12.32□□□□□ -0.44
VRK3-210ENST00000596121 MYH15Q9Y2K3 1946 aa12.32□□□□□ -0.44
VRK3-210ENST00000596121 CCDC169A6NNP5 214 aa12.31□□□□□ -0.44
VRK3-210ENST00000596121 ITGB1P05556 798 aa12.31□□□□□ -0.44
VRK3-210ENST00000596121 PRKCBP05771 671 aa12.31□□□□□ -0.44
VRK3-210ENST00000596121 LIG1P18858 919 aa12.31□□□□□ -0.44
VRK3-210ENST00000596121 PBX3P40426 434 aa12.31□□□□□ -0.44
VRK3-210ENST00000596121 GIT2Q14161 759 aa12.31□□□□□ -0.44
VRK3-210ENST00000596121 PCBP1Q15365 356 aaKnown RBP eCLIP12.31□□□□□ -0.44
VRK3-210ENST00000596121 PPM1EQ8WY54 764 aa12.31□□□□□ -0.44
VRK3-210ENST00000596121 IFT74Q96LB3 600 aa12.31□□□□□ -0.44
VRK3-210ENST00000596121 SAMD11Q96NU1 681 aa12.31□□□□□ -0.44
VRK3-210ENST00000596121 NTPCRQ9BSD7 190 aaKnown RBP12.31□□□□□ -0.44
VRK3-210ENST00000596121 C2orf40Q9H1Z8 148 aa12.31□□□□□ -0.44
VRK3-210ENST00000596121 CXCL16Q9H2A7 254 aa12.31□□□□□ -0.44
VRK3-210ENST00000596121 NXF3Q9H4D5 531 aaKnown RBP12.31□□□□□ -0.44
VRK3-210ENST00000596121 PDZD7Q9H5P4 517 aa12.31□□□□□ -0.44
VRK3-210ENST00000596121 ALG13Q9NP73 1137 aaKnown RBP12.31□□□□□ -0.44
VRK3-210ENST00000596121 PRMT7Q9NVM4 692 aaPredicted RBP12.31□□□□□ -0.44
VRK3-210ENST00000596121 MIOSQ9NXC5 875 aa12.31□□□□□ -0.44
VRK3-210ENST00000596121 ARHGAP28Q9P2N2 729 aa12.31□□□□□ -0.44
VRK3-210ENST00000596121 PCDHA7Q9UN72 937 aa12.31□□□□□ -0.44
VRK3-210ENST00000596121 PLAGL2Q9UPG8 496 aa12.31□□□□□ -0.44
VRK3-210ENST00000596121 IPPQ9Y573 584 aa12.31□□□□□ -0.44
VRK3-210ENST00000596121 COL4A4P53420 1690 aaPredicted RBP12.31□□□□□ -0.44
VRK3-210ENST00000596121 CNTNAP2Q9UHC6 1331 aa12.31□□□□□ -0.44
VRK3-210ENST00000596121 KIAA1671Q9BY89 1806 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 ACKR2O00590 384 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 SLC16A4O15374 487 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 CUTAO60888 179 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 NPTXRO95502 500 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 RB1P06400 928 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 PLS3P13797 630 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 NCLP19338 710 aaKnown RBP12.3□□□□□ -0.44
VRK3-210ENST00000596121 AXLP30530 894 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 RAB27AP51159 221 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 BECN1Q14457 450 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 PPP2R5AQ15172 486 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 E2F4Q16254 413 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 RRAGBQ5VZM2 374 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 NOTUMQ6P988 496 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 ZBTB8OSQ8IWT0 167 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 MICALL1Q8N3F8 863 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 KLHL23Q8NBE8 558 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 COLGALT1Q8NBJ5 622 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 SPPL3Q8TCT6 385 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 SPIRE2Q8WWL2 714 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 LARP4BQ92615 738 aaKnown RBP12.3□□□□□ -0.44
VRK3-210ENST00000596121 CCDC51Q96ER9 411 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 PRIMPOLQ96LW4 560 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 DRC1Q96MC2 740 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 FIZ1Q96SL8 496 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 KCND2Q9NZV8 630 aa12.3□□□□□ -0.44
VRK3-210ENST00000596121 NLRC5Q86WI3 1866 aa12.29□□□□□ -0.44
VRK3-210ENST00000596121 MYMKA6NI61 221 aa12.29□□□□□ -0.44
VRK3-210ENST00000596121 ABLIM1O14639 778 aa12.29□□□□□ -0.44
VRK3-210ENST00000596121 HOXA2O43364 376 aa12.29□□□□□ -0.44
VRK3-210ENST00000596121 SKIP12755 728 aa12.29□□□□□ -0.44
VRK3-210ENST00000596121 AKAP5P24588 427 aa12.29□□□□□ -0.44
VRK3-210ENST00000596121 ZNF131P52739 623 aa12.29□□□□□ -0.44
VRK3-210ENST00000596121 EFNA5P52803 228 aa12.29□□□□□ -0.44
VRK3-210ENST00000596121 PRPF4BQ13523 1007 aaKnown RBP12.29□□□□□ -0.44
VRK3-210ENST00000596121 MAPK6Q16659 721 aa12.29□□□□□ -0.44
VRK3-210ENST00000596121 NOMO2Q5JPE7 1267 aa12.29□□□□□ -0.44
VRK3-210ENST00000596121 ATL3Q6DD88 541 aa12.29□□□□□ -0.44
VRK3-210ENST00000596121 SLC27A1Q6PCB7 646 aa12.29□□□□□ -0.44
VRK3-210ENST00000596121 ZNF280BQ86YH2 543 aa12.29□□□□□ -0.44
VRK3-210ENST00000596121 PDILTQ8N807 584 aa12.29□□□□□ -0.44
VRK3-210ENST00000596121 TMEM161BQ8NDZ6 487 aa12.29□□□□□ -0.44
VRK3-210ENST00000596121 GSTCDQ8NEC7 633 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms