RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 PPFIBP1Q86W92 1011 aa16.48■□□□□ 0.23
PNKP-202ENST00000593706 FAM177A1Q8N128 213 aaPredicted RBP16.48■□□□□ 0.23
PNKP-202ENST00000593706 PSPC1Q8WXF1 523 aaKnown RBP16.48■□□□□ 0.23
PNKP-202ENST00000593706 CEP170P1Q96L14 293 aa16.48■□□□□ 0.23
PNKP-202ENST00000593706 MBOAT7Q96N66 472 aa16.48■□□□□ 0.23
PNKP-202ENST00000593706 FAM193BQ96PV7 902 aaPredicted RBP16.48■□□□□ 0.23
PNKP-202ENST00000593706 MFSD1Q9H3U5 465 aa16.48■□□□□ 0.23
PNKP-202ENST00000593706 SMOC2Q9H3U7 446 aa16.48■□□□□ 0.23
PNKP-202ENST00000593706 SFXN1Q9H9B4 322 aa16.48■□□□□ 0.23
PNKP-202ENST00000593706 BMP2KQ9NSY1 1161 aaPredicted RBP16.48■□□□□ 0.23
PNKP-202ENST00000593706 PCDHB2Q9Y5E7 798 aa16.48■□□□□ 0.23
PNKP-202ENST00000593706 PTPRZ1P23471 2315 aaPredicted RBP16.47■□□□□ 0.23
PNKP-202ENST00000593706 H0Y858 1186 aa16.47■□□□□ 0.23
PNKP-202ENST00000593706 MARCH6O60337 910 aa16.47■□□□□ 0.23
PNKP-202ENST00000593706 ZNF623O75123 536 aa16.47■□□□□ 0.23
PNKP-202ENST00000593706 OFD1O75665 1012 aa16.47■□□□□ 0.23
PNKP-202ENST00000593706 CTDNEP1O95476 244 aa16.47■□□□□ 0.23
PNKP-202ENST00000593706 SRGAP2CP0DJJ0 459 aa16.47■□□□□ 0.23
PNKP-202ENST00000593706 NPEPPSP55786 919 aa16.47■□□□□ 0.23
PNKP-202ENST00000593706 PPP2R5CQ13362 524 aa16.47■□□□□ 0.23
PNKP-202ENST00000593706 CCDC149Q6ZUS6 474 aa16.47■□□□□ 0.23
PNKP-202ENST00000593706 EXOC8Q8IYI6 725 aa16.47■□□□□ 0.23
PNKP-202ENST00000593706 ZDHHC14Q8IZN3 488 aa16.47■□□□□ 0.23
PNKP-202ENST00000593706 PLCD3Q8N3E9 789 aa16.47■□□□□ 0.23
PNKP-202ENST00000593706 EMILIN2Q9BXX0 1053 aa16.47■□□□□ 0.23
PNKP-202ENST00000593706 RSAD1Q9HA92 442 aa16.47■□□□□ 0.23
PNKP-202ENST00000593706 IFT122Q9HBG6 1241 aa16.47■□□□□ 0.23
PNKP-202ENST00000593706 STK39Q9UEW8 545 aa16.47■□□□□ 0.23
PNKP-202ENST00000593706 LIMD1Q9UGP4 676 aa16.47■□□□□ 0.23
PNKP-202ENST00000593706 KCNJ14Q9UNX9 436 aa16.47■□□□□ 0.23
PNKP-202ENST00000593706 USTQ9Y2C2 406 aa16.47■□□□□ 0.23
PNKP-202ENST00000593706 STK36Q9NRP7 1315 aa16.46■□□□□ 0.23
PNKP-202ENST00000593706 CNTNAP2Q9UHC6 1331 aa16.46■□□□□ 0.23
PNKP-202ENST00000593706 EML1O00423 815 aa16.46■□□□□ 0.23
PNKP-202ENST00000593706 GALR2O43603 387 aaPredicted RBP16.46■□□□□ 0.23
PNKP-202ENST00000593706 B4GALT3O60512 393 aa16.46■□□□□ 0.23
PNKP-202ENST00000593706 ERLIN2O94905 339 aa16.46■□□□□ 0.23
PNKP-202ENST00000593706 KLRC2P26717 231 aa16.46■□□□□ 0.23
PNKP-202ENST00000593706 RFC5P40937 340 aa16.46■□□□□ 0.23
PNKP-202ENST00000593706 NUBP1P53384 320 aa16.46■□□□□ 0.23
PNKP-202ENST00000593706 NEK8Q86SG6 692 aa16.46■□□□□ 0.23
PNKP-202ENST00000593706 ZNF280BQ86YH2 543 aa16.46■□□□□ 0.23
PNKP-202ENST00000593706 SLC22A17Q8WUG5 538 aa16.46■□□□□ 0.23
PNKP-202ENST00000593706 PRPF31Q8WWY3 499 aaKnown RBP16.46■□□□□ 0.23
PNKP-202ENST00000593706 TMEM143Q96AN5 459 aa16.46■□□□□ 0.23
PNKP-202ENST00000593706 ACSF2Q96CM8 615 aaPredicted RBP16.46■□□□□ 0.23
PNKP-202ENST00000593706 FAM20AQ96MK3 541 aa16.46■□□□□ 0.23
PNKP-202ENST00000593706 LXNQ9BS40 222 aa16.46■□□□□ 0.23
PNKP-202ENST00000593706 VN1R3Q9BXE9 311 aa16.46■□□□□ 0.23
PNKP-202ENST00000593706 VAV3Q9UKW4 847 aa16.46■□□□□ 0.23
PNKP-202ENST00000593706 MIA3Q5JRA6 1907 aa16.46■□□□□ 0.23
PNKP-202ENST00000593706 MYH15Q9Y2K3 1946 aa16.46■□□□□ 0.23
PNKP-202ENST00000593706 TRIP11Q15643 1979 aa16.46■□□□□ 0.22
PNKP-202ENST00000593706 DOCK6Q96HP0 2047 aa16.45■□□□□ 0.22
PNKP-202ENST00000593706 CCNT1O60563 726 aaKnown RBP16.45■□□□□ 0.22
PNKP-202ENST00000593706 EIF5BO60841 1220 aaKnown RBP16.45■□□□□ 0.22
PNKP-202ENST00000593706 CDKL5O76039 1030 aa16.45■□□□□ 0.22
PNKP-202ENST00000593706 LARGE1O95461 756 aa16.45■□□□□ 0.22
PNKP-202ENST00000593706 POMCP01189 267 aa16.45■□□□□ 0.22
PNKP-202ENST00000593706 P4HBP07237 508 aaKnown RBP16.45■□□□□ 0.22
PNKP-202ENST00000593706 GCFC2P16383 781 aaKnown RBP16.45■□□□□ 0.22
PNKP-202ENST00000593706 XBP1P17861 261 aa16.45■□□□□ 0.22
PNKP-202ENST00000593706 LAMTOR4Q0VGL1 99 aa16.45■□□□□ 0.22
PNKP-202ENST00000593706 EMC2Q15006 297 aa16.45■□□□□ 0.22
PNKP-202ENST00000593706 AGMOQ6ZNB7 445 aa16.45■□□□□ 0.22
PNKP-202ENST00000593706 SRGAP1Q7Z6B7 1085 aa16.45■□□□□ 0.22
PNKP-202ENST00000593706 TCP11Q8WWU5 503 aa16.45■□□□□ 0.22
PNKP-202ENST00000593706 DHX33Q9H6R0 707 aaKnown RBP16.45■□□□□ 0.22
PNKP-202ENST00000593706 MINDY3Q9H8M7 445 aa16.45■□□□□ 0.22
PNKP-202ENST00000593706 KCNMB3Q9NPA1 279 aa16.45■□□□□ 0.22
PNKP-202ENST00000593706 MRPL17Q9NRX2 175 aaKnown RBP16.45■□□□□ 0.22
PNKP-202ENST00000593706 KANSL3Q9P2N6 904 aa16.45■□□□□ 0.22
PNKP-202ENST00000593706 PPME1Q9Y570 386 aa16.45■□□□□ 0.22
PNKP-202ENST00000593706 FRYLO94915 3013 aa16.45■□□□□ 0.22
PNKP-202ENST00000593706 C2CD2LO14523 706 aa16.44■□□□□ 0.22
PNKP-202ENST00000593706 GAS2O43903 313 aaKnown RBP16.44■□□□□ 0.22
PNKP-202ENST00000593706 DDHD2O94830 711 aa16.44■□□□□ 0.22
PNKP-202ENST00000593706 URODP06132 367 aa16.44■□□□□ 0.22
PNKP-202ENST00000593706 CNPP09543 421 aaKnown RBP16.44■□□□□ 0.22
PNKP-202ENST00000593706 YWHABP31946 246 aaKnown RBP16.44■□□□□ 0.22
PNKP-202ENST00000593706 ANKRD1Q15327 319 aa16.44■□□□□ 0.22
PNKP-202ENST00000593706 ME3Q16798 604 aa16.44■□□□□ 0.22
PNKP-202ENST00000593706 NCAPH2Q6IBW4 605 aa16.44■□□□□ 0.22
PNKP-202ENST00000593706 OTOP3Q7RTS5 596 aa16.44■□□□□ 0.22
PNKP-202ENST00000593706 TMEM105Q8N8V8 129 aa16.44■□□□□ 0.22
PNKP-202ENST00000593706 ZNF579Q8NAF0 562 aaKnown RBP16.44■□□□□ 0.22
PNKP-202ENST00000593706 RNF149Q8NC42 400 aa16.44■□□□□ 0.22
PNKP-202ENST00000593706 KIF2CQ99661 725 aa16.44■□□□□ 0.22
PNKP-202ENST00000593706 NAP1L4Q99733 375 aaKnown RBP16.44■□□□□ 0.22
PNKP-202ENST00000593706 TMEM175Q9BSA9 504 aa16.44■□□□□ 0.22
PNKP-202ENST00000593706 PHF20Q9BVI0 1012 aa16.44■□□□□ 0.22
PNKP-202ENST00000593706 WRAP73Q9P2S5 460 aaPredicted RBP16.44■□□□□ 0.22
PNKP-202ENST00000593706 FAN1Q9Y2M0 1017 aa16.44■□□□□ 0.22
PNKP-202ENST00000593706 DTNBO60941 627 aa16.43■□□□□ 0.22
PNKP-202ENST00000593706 ALDH2P05091 517 aa16.43■□□□□ 0.22
PNKP-202ENST00000593706 ITGA4P13612 1032 aa16.43■□□□□ 0.22
PNKP-202ENST00000593706 FDPSP14324 419 aaKnown RBP16.43■□□□□ 0.22
PNKP-202ENST00000593706 CLCN4P51793 760 aa16.43■□□□□ 0.22
PNKP-202ENST00000593706 AFF1P51825 1210 aaKnown RBP16.43■□□□□ 0.22
PNKP-202ENST00000593706 CYP4A11Q02928 519 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms