RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 PEX3P56589 373 aa13.13□□□□□ -0.31
LIG3-213ENST00000590630 KRT85P78386 507 aa13.13□□□□□ -0.31
LIG3-213ENST00000590630 NUCB2P80303 420 aa13.13□□□□□ -0.31
LIG3-213ENST00000590630 RAD51AP2Q09MP3 1159 aa13.13□□□□□ -0.31
LIG3-213ENST00000590630 MCM6Q14566 821 aa13.13□□□□□ -0.31
LIG3-213ENST00000590630 PAN2Q504Q3 1202 aaKnown RBP13.13□□□□□ -0.31
LIG3-213ENST00000590630 EPC2Q52LR7 807 aa13.13□□□□□ -0.31
LIG3-213ENST00000590630 ARSHQ5FYA8 562 aa13.13□□□□□ -0.31
LIG3-213ENST00000590630 SPRED2Q7Z698 418 aa13.13□□□□□ -0.31
LIG3-213ENST00000590630 TMEM192Q8IY95 271 aa13.13□□□□□ -0.31
LIG3-213ENST00000590630 RNF169Q8NCN4 708 aa13.13□□□□□ -0.31
LIG3-213ENST00000590630 CNNM3Q8NE01 707 aa13.13□□□□□ -0.31
LIG3-213ENST00000590630 PGBD4Q96DM1 585 aa13.13□□□□□ -0.31
LIG3-213ENST00000590630 NTPCRQ9BSD7 190 aaKnown RBP13.13□□□□□ -0.31
LIG3-213ENST00000590630 C17orf80Q9BSJ5 609 aa13.13□□□□□ -0.31
LIG3-213ENST00000590630 TMEM117Q9H0C3 514 aa13.13□□□□□ -0.31
LIG3-213ENST00000590630 POLD4Q9HCU8 107 aa13.13□□□□□ -0.31
LIG3-213ENST00000590630 LARSQ9P2J5 1176 aaKnown RBP13.13□□□□□ -0.31
LIG3-213ENST00000590630 RCOR1Q9UKL0 485 aa13.13□□□□□ -0.31
LIG3-213ENST00000590630 MTUS1Q9ULD2 1270 aa13.13□□□□□ -0.31
LIG3-213ENST00000590630 RBM19Q9Y4C8 960 aaKnown RBP13.13□□□□□ -0.31
LIG3-213ENST00000590630 PCDHB2Q9Y5E7 798 aa13.13□□□□□ -0.31
LIG3-213ENST00000590630 A0A1B0GUA9 196 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 EPOPA6NHQ4 379 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 TBKBP1A7MCY6 615 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 C5orf67F2Z3F1 127 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 K7ERI5 159 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 ACKR2O00590 384 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 B4GALT5O43286 388 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 PRKCBP05771 671 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 RB1P06400 928 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 LINC00271P0C7V0 271 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 PLS3P13797 630 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 NCLP19338 710 aaKnown RBP13.12□□□□□ -0.31
LIG3-213ENST00000590630 STAT6P42226 847 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 GATMP50440 423 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 SMTNP53814 917 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 PRPF4BQ13523 1007 aaKnown RBP13.12□□□□□ -0.31
LIG3-213ENST00000590630 DHX8Q14562 1220 aaKnown RBP13.12□□□□□ -0.31
LIG3-213ENST00000590630 NAALADL2Q58DX5 795 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 CLLU1OSQ5K130 101 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 UBXN11Q5T124 520 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 AXDND1Q5T1B0 1012 aaPredicted RBP13.12□□□□□ -0.31
LIG3-213ENST00000590630 SLC27A1Q6PCB7 646 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 MRPL10Q7Z7H8 261 aaKnown RBP13.12□□□□□ -0.31
LIG3-213ENST00000590630 FBXO22Q8NEZ5 403 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 SPIRE2Q8WWL2 714 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 CPB2Q96IY4 423 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 REEP2Q9BRK0 252 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 KIFC3Q9BVG8 833 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 PLVAPQ9BX97 442 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 MRPL9Q9BYD2 267 aaKnown RBP13.12□□□□□ -0.31
LIG3-213ENST00000590630 KMT5AQ9NQR1 393 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 RNF19AQ9NV58 838 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 ARHGAP28Q9P2N2 729 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 MRPL42Q9Y6G3 142 aaKnown RBP13.12□□□□□ -0.31
LIG3-213ENST00000590630 A0A0C4DFX4 3053 aa13.12□□□□□ -0.31
LIG3-213ENST00000590630 TDRD15B5MCY1 1934 aaKnown RBP13.11□□□□□ -0.31
LIG3-213ENST00000590630 NPHP3-ACAD11A0A0J9YXS1 232 aa13.11□□□□□ -0.31
LIG3-213ENST00000590630 H0YCG3 227 aa13.11□□□□□ -0.31
LIG3-213ENST00000590630 N4BP3O15049 544 aa13.11□□□□□ -0.31
LIG3-213ENST00000590630 KRT18P05783 430 aaKnown RBP13.11□□□□□ -0.31
LIG3-213ENST00000590630 POU3F3P20264 500 aaPredicted RBP13.11□□□□□ -0.31
LIG3-213ENST00000590630 SCP2P22307 547 aa13.11□□□□□ -0.31
LIG3-213ENST00000590630 CTNNB1P35222 781 aa13.11□□□□□ -0.31
LIG3-213ENST00000590630 BMPR1AP36894 532 aa13.11□□□□□ -0.31
LIG3-213ENST00000590630 ZNF131P52739 623 aa13.11□□□□□ -0.31
LIG3-213ENST00000590630 GIT2Q14161 759 aa13.11□□□□□ -0.31
LIG3-213ENST00000590630 ADGRE1Q14246 886 aa13.11□□□□□ -0.31
LIG3-213ENST00000590630 SHC4Q6S5L8 630 aa13.11□□□□□ -0.31
LIG3-213ENST00000590630 GLB1LQ6UWU2 654 aa13.11□□□□□ -0.31
LIG3-213ENST00000590630 SV2BQ7L1I2 683 aa13.11□□□□□ -0.31
LIG3-213ENST00000590630 HACE1Q8IYU2 909 aa13.11□□□□□ -0.31
LIG3-213ENST00000590630 LRRC43Q8N309 656 aa13.11□□□□□ -0.31
LIG3-213ENST00000590630 SPATA32Q96LK8 384 aa13.11□□□□□ -0.31
LIG3-213ENST00000590630 CASD1Q96PB1 797 aa13.11□□□□□ -0.31
LIG3-213ENST00000590630 C11orf84Q9BUA3 381 aaPredicted RBP13.11□□□□□ -0.31
LIG3-213ENST00000590630 TRIM6Q9C030 488 aaPredicted RBP13.11□□□□□ -0.31
LIG3-213ENST00000590630 SCAND2PQ9GZW5 306 aaPredicted RBP13.11□□□□□ -0.31
LIG3-213ENST00000590630 CUEDC2Q9H467 287 aa13.11□□□□□ -0.31
LIG3-213ENST00000590630 TMEM134Q9H6X4 195 aa13.11□□□□□ -0.31
LIG3-213ENST00000590630 PARVGQ9HBI0 331 aa13.11□□□□□ -0.31
LIG3-213ENST00000590630 UBN1Q9NPG3 1134 aa13.11□□□□□ -0.31
LIG3-213ENST00000590630 PCDHA7Q9UN72 937 aa13.11□□□□□ -0.31
LIG3-213ENST00000590630 XIRP2A4UGR9 3374 aa13.11□□□□□ -0.31
LIG3-213ENST00000590630 A0A087X0B3 334 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 SFI1A8K8P3 1242 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 H3BNC9 293 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 SLC16A4O15374 487 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 GTPBP6O43824 516 aaPredicted RBP13.1□□□□□ -0.31
LIG3-213ENST00000590630 LPXNO60711 386 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 TBCAO75347 108 aaKnown RBP13.1□□□□□ -0.31
LIG3-213ENST00000590630 FAM13AO94988 1023 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 LIG1P18858 919 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 IGFBP4P22692 258 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 CACNB1Q02641 598 aaPredicted RBP13.1□□□□□ -0.31
LIG3-213ENST00000590630 TMEM132AQ24JP5 1023 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 PDILTQ8N807 584 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 IQUBQ8NA54 791 aa13.1□□□□□ -0.31
LIG3-213ENST00000590630 TMEM161BQ8NDZ6 487 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms