RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 GCOM2Q9BZD3 368 aaPredicted RBP12.43□□□□□ -0.42
ZNF540-209ENST00000590588 PRKD2Q9BZL6 878 aa12.43□□□□□ -0.42
ZNF540-209ENST00000590588 FAM105AQ9NUU6 356 aa12.43□□□□□ -0.42
ZNF540-209ENST00000590588 KANSL3Q9P2N6 904 aa12.43□□□□□ -0.42
ZNF540-209ENST00000590588 NRP1O14786 923 aa12.42□□□□□ -0.42
ZNF540-209ENST00000590588 DHX15O43143 795 aaKnown RBP12.42□□□□□ -0.42
ZNF540-209ENST00000590588 DDHD2O94830 711 aa12.42□□□□□ -0.42
ZNF540-209ENST00000590588 PMLP29590 882 aa12.42□□□□□ -0.42
ZNF540-209ENST00000590588 RAB27AP51159 221 aa12.42□□□□□ -0.42
ZNF540-209ENST00000590588 SHC2P98077 582 aa12.42□□□□□ -0.42
ZNF540-209ENST00000590588 PARM1Q6UWI2 310 aa12.42□□□□□ -0.42
ZNF540-209ENST00000590588 TEX2Q8IWB9 1127 aa12.42□□□□□ -0.42
ZNF540-209ENST00000590588 SMAP1Q8IYB5 467 aaPredicted RBP12.42□□□□□ -0.42
ZNF540-209ENST00000590588 ZNF654Q8IZM8 581 aa12.42□□□□□ -0.42
ZNF540-209ENST00000590588 FAM167AQ96KS9 214 aa12.42□□□□□ -0.42
ZNF540-209ENST00000590588 MYL10Q9BUA6 226 aa12.42□□□□□ -0.42
ZNF540-209ENST00000590588 INO80BQ9C086 356 aaPredicted RBP12.42□□□□□ -0.42
ZNF540-209ENST00000590588 RXFP1Q9HBX9 757 aa12.42□□□□□ -0.42
ZNF540-209ENST00000590588 NRBP2Q9NSY0 501 aa12.42□□□□□ -0.42
ZNF540-209ENST00000590588 PCDHA10Q9Y5I2 948 aa12.42□□□□□ -0.42
ZNF540-209ENST00000590588 MIA3Q5JRA6 1907 aa12.41□□□□□ -0.42
ZNF540-209ENST00000590588 MEIS3P2A8K0S8 358 aa12.41□□□□□ -0.42
ZNF540-209ENST00000590588 IPO5O00410 1097 aaKnown RBP12.41□□□□□ -0.42
ZNF540-209ENST00000590588 FOXD2O60548 495 aaPredicted RBP12.41□□□□□ -0.42
ZNF540-209ENST00000590588 CSDE1O75534 798 aaKnown RBP12.41□□□□□ -0.42
ZNF540-209ENST00000590588 PLEKHA8P1O95397 391 aa12.41□□□□□ -0.42
ZNF540-209ENST00000590588 PSAPP07602 524 aa12.41□□□□□ -0.42
ZNF540-209ENST00000590588 SPATA31D3P0C874 917 aa12.41□□□□□ -0.42
ZNF540-209ENST00000590588 CD72P21854 359 aa12.41□□□□□ -0.42
ZNF540-209ENST00000590588 SFPQP23246 707 aaKnown RBP eCLIP12.41□□□□□ -0.42
ZNF540-209ENST00000590588 FSHRP23945 695 aa12.41□□□□□ -0.42
ZNF540-209ENST00000590588 PPP2R5DQ14738 602 aa12.41□□□□□ -0.42
ZNF540-209ENST00000590588 ZNF746Q6NUN9 644 aaPredicted RBP12.41□□□□□ -0.42
ZNF540-209ENST00000590588 SPATA31D4Q6ZUB0 917 aa12.41□□□□□ -0.42
ZNF540-209ENST00000590588 MTSS1LQ765P7 747 aa12.41□□□□□ -0.42
ZNF540-209ENST00000590588 TAS1R1Q7RTX1 841 aa12.41□□□□□ -0.42
ZNF540-209ENST00000590588 CMTR1Q8N1G2 835 aaKnown RBP12.41□□□□□ -0.42
ZNF540-209ENST00000590588 HERC2P3Q9BVR0 1158 aa12.41□□□□□ -0.42
ZNF540-209ENST00000590588 PRMT8Q9NR22 394 aaPredicted RBP12.41□□□□□ -0.42
ZNF540-209ENST00000590588 SEMA4GQ9NTN9 838 aa12.41□□□□□ -0.42
ZNF540-209ENST00000590588 TBC1D22BQ9NU19 505 aa12.41□□□□□ -0.42
ZNF540-209ENST00000590588 GABBR1Q9UBS5 961 aa12.41□□□□□ -0.42
ZNF540-209ENST00000590588 CDH7Q9ULB5 785 aa12.41□□□□□ -0.42
ZNF540-209ENST00000590588 FAM208BQ5VWN6 2430 aa12.41□□□□□ -0.42
ZNF540-209ENST00000590588 DOCK8Q8NF50 2099 aa12.41□□□□□ -0.42
ZNF540-209ENST00000590588 TGM5O43548 720 aa12.4□□□□□ -0.42
ZNF540-209ENST00000590588 B4GALT3O60512 393 aa12.4□□□□□ -0.42
ZNF540-209ENST00000590588 PROS1P07225 676 aa12.4□□□□□ -0.42
ZNF540-209ENST00000590588 CYP21A2P08686 494 aa12.4□□□□□ -0.42
ZNF540-209ENST00000590588 HOXB3P14651 431 aaPredicted RBP12.4□□□□□ -0.42
ZNF540-209ENST00000590588 GLUD2P49448 558 aa12.4□□□□□ -0.42
ZNF540-209ENST00000590588 CSRP2Q16527 193 aa12.4□□□□□ -0.42
ZNF540-209ENST00000590588 LPAL2Q16609 132 aa12.4□□□□□ -0.42
ZNF540-209ENST00000590588 N4BP2L1Q5TBK1 243 aaPredicted RBP12.4□□□□□ -0.42
ZNF540-209ENST00000590588 IL31Q6EBC2 164 aa12.4□□□□□ -0.42
ZNF540-209ENST00000590588 MAMSTRQ6ZN01 415 aa12.4□□□□□ -0.42
ZNF540-209ENST00000590588 PRR23CQ6ZRP0 262 aa12.4□□□□□ -0.42
ZNF540-209ENST00000590588 HEATR3Q7Z4Q2 680 aa12.4□□□□□ -0.42
ZNF540-209ENST00000590588 PLA2G4DQ86XP0 818 aa12.4□□□□□ -0.42
ZNF540-209ENST00000590588 PALB2Q86YC2 1186 aa12.4□□□□□ -0.42
ZNF540-209ENST00000590588 TMTC2Q8N394 836 aa12.4□□□□□ -0.42
ZNF540-209ENST00000590588 CCDC136Q96JN2 1154 aa12.4□□□□□ -0.42
ZNF540-209ENST00000590588 PGBD1Q96JS3 809 aa12.4□□□□□ -0.42
ZNF540-209ENST00000590588 ANO3Q9BYT9 981 aa12.4□□□□□ -0.42
ZNF540-209ENST00000590588 LNPKQ9C0E8 428 aa12.4□□□□□ -0.42
ZNF540-209ENST00000590588 RIC8AQ9NPQ8 531 aa12.4□□□□□ -0.42
ZNF540-209ENST00000590588 FAM217BQ9NTX9 383 aaPredicted RBP12.4□□□□□ -0.42
ZNF540-209ENST00000590588 TCEAL9Q9UHQ7 104 aa12.4□□□□□ -0.42
ZNF540-209ENST00000590588 PIN4Q9Y237 131 aaKnown RBP12.4□□□□□ -0.42
ZNF540-209ENST00000590588 MRPS17Q9Y2R5 130 aaKnown RBP12.4□□□□□ -0.42
ZNF540-209ENST00000590588 hCG_1642624A0A1W2PR95 340 aa12.39□□□□□ -0.43
ZNF540-209ENST00000590588 E7EWF7 191 aa12.39□□□□□ -0.43
ZNF540-209ENST00000590588 TARSP26639 723 aaKnown RBP12.39□□□□□ -0.43
ZNF540-209ENST00000590588 SREBF1P36956 1147 aa12.39□□□□□ -0.43
ZNF540-209ENST00000590588 DSG1Q02413 1049 aa12.39□□□□□ -0.43
ZNF540-209ENST00000590588 ADCY1Q08828 1119 aa12.39□□□□□ -0.43
ZNF540-209ENST00000590588 MTAPQ13126 283 aa12.39□□□□□ -0.43
ZNF540-209ENST00000590588 ZNF852Q6ZMS4 543 aa12.39□□□□□ -0.43
ZNF540-209ENST00000590588 AGMOQ6ZNB7 445 aa12.39□□□□□ -0.43
ZNF540-209ENST00000590588 CCDC82Q8N4S0 544 aa12.39□□□□□ -0.43
ZNF540-209ENST00000590588 ZNF577Q9BSK1 485 aa12.39□□□□□ -0.43
ZNF540-209ENST00000590588 OSBPL3Q9H4L5 887 aa12.39□□□□□ -0.43
ZNF540-209ENST00000590588 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.39□□□□□ -0.43
ZNF540-209ENST00000590588 SAMM50Q9Y512 469 aa12.39□□□□□ -0.43
ZNF540-209ENST00000590588 PCDHB2Q9Y5E7 798 aa12.39□□□□□ -0.43
ZNF540-209ENST00000590588 PATJQ8NI35 1801 aa12.39□□□□□ -0.43
ZNF540-209ENST00000590588 A0A087WZ62 844 aa12.38□□□□□ -0.43
ZNF540-209ENST00000590588 FAM86B1E9PN63 330 aa12.38□□□□□ -0.43
ZNF540-209ENST00000590588 GDF9O60383 454 aa12.38□□□□□ -0.43
ZNF540-209ENST00000590588 FAM86B2P0C5J1 330 aa12.38□□□□□ -0.43
ZNF540-209ENST00000590588 CALM1P0DP23 149 aa12.38□□□□□ -0.43
ZNF540-209ENST00000590588 CALM2P0DP24 149 aa12.38□□□□□ -0.43
ZNF540-209ENST00000590588 CALM3P0DP25 149 aa12.38□□□□□ -0.43
ZNF540-209ENST00000590588 OR1G1P47890 313 aa12.38□□□□□ -0.43
ZNF540-209ENST00000590588 DNM2P50570 870 aa12.38□□□□□ -0.43
ZNF540-209ENST00000590588 AP3B2Q13367 1082 aa12.38□□□□□ -0.43
ZNF540-209ENST00000590588 FZD5Q13467 585 aa12.38□□□□□ -0.43
ZNF540-209ENST00000590588 LILRA6Q6PI73 481 aa12.38□□□□□ -0.43
ZNF540-209ENST00000590588 PRR23BQ6ZRT6 265 aa12.38□□□□□ -0.43
ZNF540-209ENST00000590588 TPRG1Q6ZUI0 275 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms