RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 ATG2AQ2TAZ0 1938 aa12.51□□□□□ -0.41
SMAD4-211ENST00000590499 C9IYK1 514 aa12.51□□□□□ -0.41
SMAD4-211ENST00000590499 GPR182O15218 404 aa12.51□□□□□ -0.41
SMAD4-211ENST00000590499 SPTLC1O15269 473 aa12.51□□□□□ -0.41
SMAD4-211ENST00000590499 DGKIO75912 1065 aa12.51□□□□□ -0.41
SMAD4-211ENST00000590499 CCNYL3P0C7X3 344 aa12.51□□□□□ -0.41
SMAD4-211ENST00000590499 RFC5P40937 340 aa12.51□□□□□ -0.41
SMAD4-211ENST00000590499 WNT7BP56706 349 aa12.51□□□□□ -0.41
SMAD4-211ENST00000590499 PTPRNQ16849 979 aa12.51□□□□□ -0.41
SMAD4-211ENST00000590499 ODR4Q5SWX8 454 aa12.51□□□□□ -0.41
SMAD4-211ENST00000590499 NPAS4Q8IUM7 802 aa12.51□□□□□ -0.41
SMAD4-211ENST00000590499 TPH2Q8IWU9 490 aa12.51□□□□□ -0.41
SMAD4-211ENST00000590499 SLC7A3Q8WY07 619 aa12.51□□□□□ -0.41
SMAD4-211ENST00000590499 ZNF668Q96K58 619 aaPredicted RBP12.51□□□□□ -0.41
SMAD4-211ENST00000590499 C17orf80Q9BSJ5 609 aa12.51□□□□□ -0.41
SMAD4-211ENST00000590499 XPNPEP1Q9NQW7 623 aa12.51□□□□□ -0.41
SMAD4-211ENST00000590499 RGS18Q9NS28 235 aa12.51□□□□□ -0.41
SMAD4-211ENST00000590499 SUCLA2Q9P2R7 463 aaPredicted RBP12.51□□□□□ -0.41
SMAD4-211ENST00000590499 PCDHB6Q9Y5E3 794 aa12.51□□□□□ -0.41
SMAD4-211ENST00000590499 GAS2O43903 313 aaKnown RBP12.5□□□□□ -0.41
SMAD4-211ENST00000590499 MED24O75448 989 aa12.5□□□□□ -0.41
SMAD4-211ENST00000590499 TECP42680 631 aa12.5□□□□□ -0.41
SMAD4-211ENST00000590499 SARSP49591 514 aaKnown RBP12.5□□□□□ -0.41
SMAD4-211ENST00000590499 DNM2P50570 870 aa12.5□□□□□ -0.41
SMAD4-211ENST00000590499 POLGP54098 1239 aaPredicted RBP12.5□□□□□ -0.41
SMAD4-211ENST00000590499 FAM189BP81408 668 aa12.5□□□□□ -0.41
SMAD4-211ENST00000590499 CDC42EP1Q00587 391 aa12.5□□□□□ -0.41
SMAD4-211ENST00000590499 GRB10Q13322 594 aa12.5□□□□□ -0.41
SMAD4-211ENST00000590499 EMC2Q15006 297 aa12.5□□□□□ -0.41
SMAD4-211ENST00000590499 XKR9Q5GH70 373 aa12.5□□□□□ -0.41
SMAD4-211ENST00000590499 OTUD6AQ7L8S5 288 aa12.5□□□□□ -0.41
SMAD4-211ENST00000590499 TRIM46Q7Z4K8 759 aa12.5□□□□□ -0.41
SMAD4-211ENST00000590499 ZNF410Q86VK4 478 aa12.5□□□□□ -0.41
SMAD4-211ENST00000590499 CATSPER3Q86XQ3 398 aa12.5□□□□□ -0.41
SMAD4-211ENST00000590499 EXOC8Q8IYI6 725 aa12.5□□□□□ -0.41
SMAD4-211ENST00000590499 ADAM2Q99965 735 aa12.5□□□□□ -0.41
SMAD4-211ENST00000590499 POLR3CQ9BUI4 534 aaPredicted RBP12.5□□□□□ -0.41
SMAD4-211ENST00000590499 TUFT1Q9NNX1 390 aa12.5□□□□□ -0.41
SMAD4-211ENST00000590499 C1orf112Q9NSG2 853 aa12.5□□□□□ -0.41
SMAD4-211ENST00000590499 ANKEF1Q9NU02 776 aa12.5□□□□□ -0.41
SMAD4-211ENST00000590499 MTCH2Q9Y6C9 303 aa12.5□□□□□ -0.41
SMAD4-211ENST00000590499 ADGRA3Q8IWK6 1321 aa12.5□□□□□ -0.41
SMAD4-211ENST00000590499 TTC28Q96AY4 2481 aa12.49□□□□□ -0.41
SMAD4-211ENST00000590499 A0A087WZ62 844 aa12.49□□□□□ -0.41
SMAD4-211ENST00000590499 H3BM21 787 aa12.49□□□□□ -0.41
SMAD4-211ENST00000590499 H3BQV1 296 aa12.49□□□□□ -0.41
SMAD4-211ENST00000590499 XRCC6P12956 609 aaKnown RBP eCLIP12.49□□□□□ -0.41
SMAD4-211ENST00000590499 IGFBP4P22692 258 aa12.49□□□□□ -0.41
SMAD4-211ENST00000590499 RPA1P27694 616 aa12.49□□□□□ -0.41
SMAD4-211ENST00000590499 RARRES1P49788 294 aa12.49□□□□□ -0.41
SMAD4-211ENST00000590499 RILPL1Q5EBL4 403 aa12.49□□□□□ -0.41
SMAD4-211ENST00000590499 MCTP1Q6DN14 999 aa12.49□□□□□ -0.41
SMAD4-211ENST00000590499 SLC24A5Q71RS6 500 aa12.49□□□□□ -0.41
SMAD4-211ENST00000590499 RHPN2Q8IUC4 686 aa12.49□□□□□ -0.41
SMAD4-211ENST00000590499 KSR1Q8IVT5 923 aa12.49□□□□□ -0.41
SMAD4-211ENST00000590499 IGSF22Q8N9C0 903 aa12.49□□□□□ -0.41
SMAD4-211ENST00000590499 GDPD5Q8WTR4 605 aa12.49□□□□□ -0.41
SMAD4-211ENST00000590499 CLP1Q92989 425 aaKnown RBP12.49□□□□□ -0.41
SMAD4-211ENST00000590499 TMEM143Q96AN5 459 aa12.49□□□□□ -0.41
SMAD4-211ENST00000590499 SAMD11Q96NU1 681 aa12.49□□□□□ -0.41
SMAD4-211ENST00000590499 FDXACB1Q9BRP7 624 aaPredicted RBP12.49□□□□□ -0.41
SMAD4-211ENST00000590499 GCOM2Q9BZD3 368 aaPredicted RBP12.49□□□□□ -0.41
SMAD4-211ENST00000590499 IFT122Q9HBG6 1241 aa12.49□□□□□ -0.41
SMAD4-211ENST00000590499 MTUS1Q9ULD2 1270 aa12.49□□□□□ -0.41
SMAD4-211ENST00000590499 COL4A3BPQ9Y5P4 624 aa12.49□□□□□ -0.41
SMAD4-211ENST00000590499 MUC3AQ02505 3323 aa12.49□□□□□ -0.41
SMAD4-211ENST00000590499 A0A087WWV3 80 aa12.48□□□□□ -0.41
SMAD4-211ENST00000590499 DENND3A2RUS2 1198 aa12.48□□□□□ -0.41
SMAD4-211ENST00000590499 LAD1O00515 517 aa12.48□□□□□ -0.41
SMAD4-211ENST00000590499 CSDE1O75534 798 aaKnown RBP12.48□□□□□ -0.41
SMAD4-211ENST00000590499 STAG3L1P0CL83 205 aa12.48□□□□□ -0.41
SMAD4-211ENST00000590499 BMP1P13497 986 aa12.48□□□□□ -0.41
SMAD4-211ENST00000590499 FGFR4P22455 802 aa12.48□□□□□ -0.41
SMAD4-211ENST00000590499 PRPHP41219 470 aa12.48□□□□□ -0.41
SMAD4-211ENST00000590499 ATP2C1P98194 919 aaPredicted RBP12.48□□□□□ -0.41
SMAD4-211ENST00000590499 LAMTOR4Q0VGL1 99 aa12.48□□□□□ -0.41
SMAD4-211ENST00000590499 IL17AQ16552 155 aa12.48□□□□□ -0.41
SMAD4-211ENST00000590499 EPC2Q52LR7 807 aa12.48□□□□□ -0.41
SMAD4-211ENST00000590499 LARP1BQ659C4 914 aaKnown RBP12.48□□□□□ -0.41
SMAD4-211ENST00000590499 DESI1Q6ICB0 168 aa12.48□□□□□ -0.41
SMAD4-211ENST00000590499 FERMT3Q86UX7 667 aa12.48□□□□□ -0.41
SMAD4-211ENST00000590499 CMTR2Q8IYT2 770 aaKnown RBP12.48□□□□□ -0.41
SMAD4-211ENST00000590499 FIBCD1Q8N539 461 aa12.48□□□□□ -0.41
SMAD4-211ENST00000590499 PIGOQ8TEQ8 1089 aa12.48□□□□□ -0.41
SMAD4-211ENST00000590499 PRPF31Q8WWY3 499 aaKnown RBP12.48□□□□□ -0.41
SMAD4-211ENST00000590499 PSPC1Q8WXF1 523 aaKnown RBP12.48□□□□□ -0.41
SMAD4-211ENST00000590499 SCLT1Q96NL6 688 aa12.48□□□□□ -0.41
SMAD4-211ENST00000590499 ELAC1Q9H777 363 aaKnown RBP12.48□□□□□ -0.41
SMAD4-211ENST00000590499 EVA1BQ9NVM1 165 aa12.48□□□□□ -0.41
SMAD4-211ENST00000590499 DBR1Q9UK59 544 aaKnown RBP12.48□□□□□ -0.41
SMAD4-211ENST00000590499 NCOR1O75376 2440 aa12.47□□□□□ -0.41
SMAD4-211ENST00000590499 C5orf67F2Z3F1 127 aa12.47□□□□□ -0.41
SMAD4-211ENST00000590499 MUTP22033 750 aa12.47□□□□□ -0.41
SMAD4-211ENST00000590499 GATMP50440 423 aa12.47□□□□□ -0.41
SMAD4-211ENST00000590499 BTG3Q14201 252 aaPredicted RBP12.47□□□□□ -0.41
SMAD4-211ENST00000590499 PDIA5Q14554 519 aa12.47□□□□□ -0.41
SMAD4-211ENST00000590499 ECM1Q16610 540 aa12.47□□□□□ -0.41
SMAD4-211ENST00000590499 HAUS3Q68CZ6 603 aa12.47□□□□□ -0.41
SMAD4-211ENST00000590499 TMEM192Q8IY95 271 aa12.47□□□□□ -0.41
SMAD4-211ENST00000590499 ERMNQ8TAM6 284 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms