RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 KCNJ18B7U540 433 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 MAFO75444 373 aaPredicted RBP11.49□□□□□ -0.57
VPS4B-204ENST00000589604 GCNT3O95395 438 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 CLCN3P51790 818 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 NCKAP1LP55160 1127 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 PTK7Q13308 1070 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 KCNJ12Q14500 433 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 MBTPS1Q14703 1052 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 TPD52L1Q16890 204 aaPredicted RBP11.49□□□□□ -0.57
VPS4B-204ENST00000589604 ZNF618Q5T7W0 954 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 FAM102BQ5T8I3 360 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 FAM178BQ8IXR5 827 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 NOC3LQ8WTT2 800 aaKnown RBP11.49□□□□□ -0.57
VPS4B-204ENST00000589604 DRC1Q96MC2 740 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 MFRPQ9BY79 579 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 FAM49AQ9H0Q0 323 aaPredicted RBP11.49□□□□□ -0.57
VPS4B-204ENST00000589604 CDHR5Q9HBB8 845 aa11.49□□□□□ -0.57
VPS4B-204ENST00000589604 LARSQ9P2J5 1176 aaKnown RBP11.49□□□□□ -0.57
VPS4B-204ENST00000589604 TANC1Q9C0D5 1861 aa11.48□□□□□ -0.57
VPS4B-204ENST00000589604 PDXKO00764 312 aa11.48□□□□□ -0.57
VPS4B-204ENST00000589604 TLR3O15455 904 aaKnown RBP11.48□□□□□ -0.57
VPS4B-204ENST00000589604 TEX33O43247 280 aa11.48□□□□□ -0.57
VPS4B-204ENST00000589604 SERPINC1P01008 464 aa11.48□□□□□ -0.57
VPS4B-204ENST00000589604 CKBP12277 381 aa11.48□□□□□ -0.57
VPS4B-204ENST00000589604 CDK11BP21127 795 aaKnown RBP11.48□□□□□ -0.57
VPS4B-204ENST00000589604 ARL2P36404 184 aa11.48□□□□□ -0.57
VPS4B-204ENST00000589604 PBX1P40424 430 aa11.48□□□□□ -0.57
VPS4B-204ENST00000589604 NPTX2P47972 431 aa11.48□□□□□ -0.57
VPS4B-204ENST00000589604 PEX3P56589 373 aa11.48□□□□□ -0.57
VPS4B-204ENST00000589604 GTF2BQ00403 316 aa11.48□□□□□ -0.57
VPS4B-204ENST00000589604 TMEM62Q0P6H9 643 aa11.48□□□□□ -0.57
VPS4B-204ENST00000589604 EMC2Q15006 297 aa11.48□□□□□ -0.57
VPS4B-204ENST00000589604 EDRF1Q3B7T1 1238 aa11.48□□□□□ -0.57
VPS4B-204ENST00000589604 EFCAB12Q6NXP0 572 aa11.48□□□□□ -0.57
VPS4B-204ENST00000589604 MCPH1Q8NEM0 835 aa11.48□□□□□ -0.57
VPS4B-204ENST00000589604 SPIRE2Q8WWL2 714 aa11.48□□□□□ -0.57
VPS4B-204ENST00000589604 KIFAP3Q92845 792 aa11.48□□□□□ -0.57
VPS4B-204ENST00000589604 ZNF668Q96K58 619 aaPredicted RBP11.48□□□□□ -0.57
VPS4B-204ENST00000589604 CCDC43Q96MW1 224 aaKnown RBP11.48□□□□□ -0.57
VPS4B-204ENST00000589604 HIPK3Q9H422 1215 aa11.48□□□□□ -0.57
VPS4B-204ENST00000589604 ATP6V0A4Q9HBG4 840 aa11.48□□□□□ -0.57
VPS4B-204ENST00000589604 UBE4BO95155 1302 aa11.48□□□□□ -0.57
VPS4B-204ENST00000589604 SMIM35A0A1B0GVV1 85 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 KIF20AO95235 890 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 CHRNA1P02708 482 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 VTNP04004 478 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 CTSHP09668 335 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 GNAT1P11488 350 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 RFC5P40937 340 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 COPB1P53618 953 aaKnown RBP11.47□□□□□ -0.57
VPS4B-204ENST00000589604 CCL23P55773 120 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 RBL2Q08999 1139 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 MGAT3Q09327 533 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 TBC1D8BQ0IIM8 1120 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 NFIL3Q16649 462 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 PTPN21Q16825 1174 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 TCTN1Q2MV58 587 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 HAUS6Q7Z4H7 955 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 METTL13Q8N6R0 699 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 SPC24Q8NBT2 197 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 TMEM161BQ8NDZ6 487 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 ASAP3Q8TDY4 903 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 KCNN1Q92952 543 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 TMEM143Q96AN5 459 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 SCLYQ96I15 445 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 PPP1R16BQ96T49 567 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 POLR3FQ9H1D9 316 aaPredicted RBP11.47□□□□□ -0.57
VPS4B-204ENST00000589604 SUGCTQ9HAC7 445 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 C17orf75Q9HAS0 396 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 TYW1Q9NV66 732 aaKnown RBP11.47□□□□□ -0.57
VPS4B-204ENST00000589604 NOD1Q9Y239 953 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 PPME1Q9Y570 386 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 PCDHB13Q9Y5F0 798 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 ADGRA3Q8IWK6 1321 aa11.47□□□□□ -0.57
VPS4B-204ENST00000589604 H0YGN5 161 aa11.46□□□□□ -0.57
VPS4B-204ENST00000589604 SLC16A4O15374 487 aa11.46□□□□□ -0.57
VPS4B-204ENST00000589604 CBFA2T2O43439 604 aa11.46□□□□□ -0.57
VPS4B-204ENST00000589604 TIMP1P01033 207 aa11.46□□□□□ -0.57
VPS4B-204ENST00000589604 EEF1GP26641 437 aaKnown RBP11.46□□□□□ -0.57
VPS4B-204ENST00000589604 THPOP40225 353 aa11.46□□□□□ -0.57
VPS4B-204ENST00000589604 POLGP54098 1239 aaPredicted RBP11.46□□□□□ -0.57
VPS4B-204ENST00000589604 EPHB4P54760 987 aa11.46□□□□□ -0.57
VPS4B-204ENST00000589604 FKBP3Q00688 224 aaKnown RBP11.46□□□□□ -0.57
VPS4B-204ENST00000589604 C1QBPQ07021 282 aaKnown RBP11.46□□□□□ -0.57
VPS4B-204ENST00000589604 SPAG1Q07617 926 aa11.46□□□□□ -0.57
VPS4B-204ENST00000589604 MIIPQ5JXC2 388 aa11.46□□□□□ -0.57
VPS4B-204ENST00000589604 TMCO4Q5TGY1 634 aa11.46□□□□□ -0.57
VPS4B-204ENST00000589604 TAS1R3Q7RTX0 852 aa11.46□□□□□ -0.57
VPS4B-204ENST00000589604 BADQ92934 168 aa11.46□□□□□ -0.57
VPS4B-204ENST00000589604 CNOT6LQ96LI5 555 aaKnown RBP11.46□□□□□ -0.57
VPS4B-204ENST00000589604 CEP63Q96MT8 703 aa11.46□□□□□ -0.57
VPS4B-204ENST00000589604 TSG101Q99816 390 aa11.46□□□□□ -0.57
VPS4B-204ENST00000589604 DMAC2Q9NW81 257 aa11.46□□□□□ -0.57
VPS4B-204ENST00000589604 TAB2Q9NYJ8 693 aa11.46□□□□□ -0.57
VPS4B-204ENST00000589604 LAMA3Q16787 3333 aa11.46□□□□□ -0.57
VPS4B-204ENST00000589604 TET1Q8NFU7 2136 aa11.46□□□□□ -0.58
VPS4B-204ENST00000589604 K7ENM7 598 aa11.46□□□□□ -0.58
VPS4B-204ENST00000589604 MAGEB2O15479 319 aa11.46□□□□□ -0.58
VPS4B-204ENST00000589604 GPR32O75388 356 aa11.46□□□□□ -0.58
VPS4B-204ENST00000589604 GLRA2P23416 452 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms