RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 NFE2L2Q16236 605 aa4.82□□□□□ -1.64
VPS4B-203ENST00000588323 HECTD2Q5U5R9 776 aa4.82□□□□□ -1.64
VPS4B-203ENST00000588323 CREB3L3Q68CJ9 461 aa4.82□□□□□ -1.64
VPS4B-203ENST00000588323 PIK3C3Q8NEB9 887 aa4.82□□□□□ -1.64
VPS4B-203ENST00000588323 OR52N2Q8NGI0 321 aa4.82□□□□□ -1.64
VPS4B-203ENST00000588323 ENKD1Q9H0I2 346 aa4.82□□□□□ -1.64
VPS4B-203ENST00000588323 OSBPL2Q9H1P3 480 aa4.82□□□□□ -1.64
VPS4B-203ENST00000588323 KCNH6Q9H252 994 aa4.82□□□□□ -1.64
VPS4B-203ENST00000588323 CYP4F11Q9HBI6 524 aa4.82□□□□□ -1.64
VPS4B-203ENST00000588323 IFT57Q9NWB7 429 aa4.82□□□□□ -1.64
VPS4B-203ENST00000588323 PTGFRNQ9P2B2 879 aa4.82□□□□□ -1.64
VPS4B-203ENST00000588323 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.82□□□□□ -1.64
VPS4B-203ENST00000588323 PCDHB6Q9Y5E3 794 aa4.82□□□□□ -1.64
VPS4B-203ENST00000588323 TNFRSF18Q9Y5U5 241 aa4.82□□□□□ -1.64
VPS4B-203ENST00000588323 COL4A3Q01955 1670 aa4.82□□□□□ -1.64
VPS4B-203ENST00000588323 ST20-MTHFSA0A0A6YYL1 179 aa4.81□□□□□ -1.64
VPS4B-203ENST00000588323 GAS7O60861 476 aa4.81□□□□□ -1.64
VPS4B-203ENST00000588323 SDSP20132 328 aa4.81□□□□□ -1.64
VPS4B-203ENST00000588323 CASRP41180 1078 aa4.81□□□□□ -1.64
VPS4B-203ENST00000588323 WNT3AP56704 352 aa4.81□□□□□ -1.64
VPS4B-203ENST00000588323 CD69Q07108 199 aa4.81□□□□□ -1.64
VPS4B-203ENST00000588323 MRPL49Q13405 166 aaKnown RBP4.81□□□□□ -1.64
VPS4B-203ENST00000588323 SQSTM1Q13501 440 aa4.81□□□□□ -1.64
VPS4B-203ENST00000588323 VPS72Q15906 364 aa4.81□□□□□ -1.64
VPS4B-203ENST00000588323 IQSEC1Q6DN90 963 aa4.81□□□□□ -1.64
VPS4B-203ENST00000588323 PASD1Q8IV76 773 aa4.81□□□□□ -1.64
VPS4B-203ENST00000588323 CDYL2Q8N8U2 506 aa4.81□□□□□ -1.64
VPS4B-203ENST00000588323 PPP1R14CQ8TAE6 165 aa4.81□□□□□ -1.64
VPS4B-203ENST00000588323 FERMT2Q96AC1 680 aa4.81□□□□□ -1.64
VPS4B-203ENST00000588323 MYEOVQ96EZ4 313 aa4.81□□□□□ -1.64
VPS4B-203ENST00000588323 IL17RAQ96F46 866 aa4.81□□□□□ -1.64
VPS4B-203ENST00000588323 NDC1Q9BTX1 674 aa4.81□□□□□ -1.64
VPS4B-203ENST00000588323 SLC46A2Q9BY10 475 aa4.81□□□□□ -1.64
VPS4B-203ENST00000588323 TOR3AQ9H497 397 aa4.81□□□□□ -1.64
VPS4B-203ENST00000588323 ZNF768Q9H5H4 540 aaKnown RBP4.81□□□□□ -1.64
VPS4B-203ENST00000588323 ZMAT4Q9H898 229 aa4.81□□□□□ -1.64
VPS4B-203ENST00000588323 H2AFY2Q9P0M6 372 aaPredicted RBP4.81□□□□□ -1.64
VPS4B-203ENST00000588323 CDK11AQ9UQ88 783 aaPredicted RBP4.81□□□□□ -1.64
VPS4B-203ENST00000588323 ZAR1LA6NP61 321 aa4.8□□□□□ -1.64
VPS4B-203ENST00000588323 AHRRA9YTQ3 701 aa4.8□□□□□ -1.64
VPS4B-203ENST00000588323 PPP1R12AO14974 1030 aaPredicted RBP4.8□□□□□ -1.64
VPS4B-203ENST00000588323 CFBP00751 764 aa4.8□□□□□ -1.64
VPS4B-203ENST00000588323 ATP2A2P16615 1042 aaKnown RBP4.8□□□□□ -1.64
VPS4B-203ENST00000588323 XPAP23025 273 aaPredicted RBP4.8□□□□□ -1.64
VPS4B-203ENST00000588323 MRPS21P82921 87 aaKnown RBP4.8□□□□□ -1.64
VPS4B-203ENST00000588323 TAP1Q03518 808 aa4.8□□□□□ -1.64
VPS4B-203ENST00000588323 DUSP2Q05923 314 aa4.8□□□□□ -1.64
VPS4B-203ENST00000588323 BMS1Q14692 1282 aaKnown RBP4.8□□□□□ -1.64
VPS4B-203ENST00000588323 CCDC142Q17RM4 750 aa4.8□□□□□ -1.64
VPS4B-203ENST00000588323 ESPNLQ6ZVH7 1005 aa4.8□□□□□ -1.64
VPS4B-203ENST00000588323 BEND2Q8NDZ0 799 aa4.8□□□□□ -1.64
VPS4B-203ENST00000588323 CPEB1Q9BZB8 566 aaKnown RBP4.8□□□□□ -1.64
VPS4B-203ENST00000588323 TRPM5Q9NZQ8 1165 aa4.8□□□□□ -1.64
VPS4B-203ENST00000588323 MAGEC2Q9UBF1 373 aaPredicted RBP4.8□□□□□ -1.64
VPS4B-203ENST00000588323 USP18Q9UMW8 372 aa4.8□□□□□ -1.64
VPS4B-203ENST00000588323 CLCA2Q9UQC9 943 aa4.8□□□□□ -1.64
VPS4B-203ENST00000588323 CENPVL1A0A0U1RR11 272 aa4.79□□□□□ -1.64
VPS4B-203ENST00000588323 ELL2O00472 640 aaPredicted RBP4.79□□□□□ -1.64
VPS4B-203ENST00000588323 NRP2O60462 931 aa4.79□□□□□ -1.64
VPS4B-203ENST00000588323 RFPL3O75679 317 aa4.79□□□□□ -1.64
VPS4B-203ENST00000588323 LY86O95711 162 aa4.79□□□□□ -1.64
VPS4B-203ENST00000588323 LMO1P25800 156 aa4.79□□□□□ -1.64
VPS4B-203ENST00000588323 ZFP36P26651 326 aaKnown RBP4.79□□□□□ -1.64
VPS4B-203ENST00000588323 APOBEC3AP31941 199 aaPredicted RBP4.79□□□□□ -1.64
VPS4B-203ENST00000588323 GZMKP49863 264 aa4.79□□□□□ -1.64
VPS4B-203ENST00000588323 LRRC32Q14392 662 aa4.79□□□□□ -1.64
VPS4B-203ENST00000588323 STRIP1Q5VSL9 837 aa4.79□□□□□ -1.64
VPS4B-203ENST00000588323 LMBR1LQ6UX01 489 aa4.79□□□□□ -1.64
VPS4B-203ENST00000588323 DOK3Q7L591 496 aa4.79□□□□□ -1.64
VPS4B-203ENST00000588323 PRIMA1Q86XR5 153 aa4.79□□□□□ -1.64
VPS4B-203ENST00000588323 EFHBQ8N7U6 833 aa4.79□□□□□ -1.64
VPS4B-203ENST00000588323 ZNF764Q96H86 408 aaPredicted RBP4.79□□□□□ -1.64
VPS4B-203ENST00000588323 DCLRE1CQ96SD1 692 aaKnown RBP4.79□□□□□ -1.64
VPS4B-203ENST00000588323 DNAJC2Q99543 621 aaKnown RBP4.79□□□□□ -1.64
VPS4B-203ENST00000588323 LSM14BQ9BX40 385 aaKnown RBP4.79□□□□□ -1.64
VPS4B-203ENST00000588323 INTS7Q9NVH2 962 aaKnown RBP4.79□□□□□ -1.64
VPS4B-203ENST00000588323 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.79□□□□□ -1.64
VPS4B-203ENST00000588323 USP36Q9P275 1121 aaKnown RBP4.79□□□□□ -1.64
VPS4B-203ENST00000588323 MSRAQ9UJ68 235 aa4.79□□□□□ -1.64
VPS4B-203ENST00000588323 RNASET2O00584 256 aaKnown RBP4.78□□□□□ -1.64
VPS4B-203ENST00000588323 KPNA6O60684 536 aa4.78□□□□□ -1.64
VPS4B-203ENST00000588323 LPXNO60711 386 aa4.78□□□□□ -1.64
VPS4B-203ENST00000588323 ASMTLO95671 621 aa4.78□□□□□ -1.64
VPS4B-203ENST00000588323 HSP90B1P14625 803 aaKnown RBP4.78□□□□□ -1.64
VPS4B-203ENST00000588323 ZEB1P37275 1124 aaPredicted RBP4.78□□□□□ -1.64
VPS4B-203ENST00000588323 PTTG1IPP53801 180 aa4.78□□□□□ -1.64
VPS4B-203ENST00000588323 USP14P54578 494 aa4.78□□□□□ -1.64
VPS4B-203ENST00000588323 NRG3P56975 720 aa4.78□□□□□ -1.64
VPS4B-203ENST00000588323 FAM189BP81408 668 aa4.78□□□□□ -1.64
VPS4B-203ENST00000588323 PABPC4Q13310 644 aaKnown RBP eCLIP4.78□□□□□ -1.64
VPS4B-203ENST00000588323 OLFML1Q6UWY5 402 aa4.78□□□□□ -1.64
VPS4B-203ENST00000588323 TAS1R1Q7RTX1 841 aa4.78□□□□□ -1.64
VPS4B-203ENST00000588323 GDF7Q7Z4P5 450 aa4.78□□□□□ -1.64
VPS4B-203ENST00000588323 ADGRG3Q86Y34 549 aa4.78□□□□□ -1.64
VPS4B-203ENST00000588323 KIF18BQ86Y91 864 aa4.78□□□□□ -1.64
VPS4B-203ENST00000588323 SUPT20HQ8NEM7 779 aa4.78□□□□□ -1.64
VPS4B-203ENST00000588323 SH3TC2Q8TF17 1288 aa4.78□□□□□ -1.64
VPS4B-203ENST00000588323 GAB3Q8WWW8 586 aa4.78□□□□□ -1.64
VPS4B-203ENST00000588323 MRFAP1L1Q96HT8 127 aa4.78□□□□□ -1.64
VPS4B-203ENST00000588323 ORAI3Q9BRQ5 295 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms