RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 EXOSC10Q01780 885 aaKnown RBP12.42□□□□□ -0.42
VPS4B-202ENST00000588059 CYP26C1Q6V0L0 522 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 CATSPER4Q7RTX7 472 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 C1orf210Q8IVY1 113 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 SUMF1Q8NBK3 374 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 NXPE3Q969Y0 559 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 ZNF707Q96C28 371 aaPredicted RBP12.42□□□□□ -0.42
VPS4B-202ENST00000588059 RPS6KC1Q96S38 1066 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 RIT2Q99578 217 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 TMEM175Q9BSA9 504 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 HERC2P3Q9BVR0 1158 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 NIFKQ9BYG3 293 aaKnown RBP12.42□□□□□ -0.42
VPS4B-202ENST00000588059 INO80BQ9C086 356 aaPredicted RBP12.42□□□□□ -0.42
VPS4B-202ENST00000588059 C6orf50Q9HD87 102 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 AGPAT5Q9NUQ2 364 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 MARCH5Q9NX47 278 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 SIT1Q9Y3P8 196 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 PCDHB2Q9Y5E7 798 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 TDRD15B5MCY1 1934 aaKnown RBP12.42□□□□□ -0.42
VPS4B-202ENST00000588059 COL4A3Q01955 1670 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 KMT2BQ9UMN6 2715 aaPredicted RBP12.41□□□□□ -0.42
VPS4B-202ENST00000588059 KLF18A0A0U1RQI7 1052 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 POTEMA6NI47 508 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 NRP1O14786 923 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 GAS7O60861 476 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 KRT37O76014 449 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 PAPLNO95428 1278 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 GLUD1P00367 558 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 NEFLP07196 543 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 ADH1AP07327 375 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 MYBP10242 640 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 GLULP15104 373 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 DNM2P50570 870 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 AK2P54819 239 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 HTR4Q13639 388 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 POTEGQ6S5H5 508 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 MRPL10Q7Z7H8 261 aaKnown RBP12.41□□□□□ -0.42
VPS4B-202ENST00000588059 RHPN2Q8IUC4 686 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 KSR1Q8IVT5 923 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 RNF168Q8IYW5 571 aaPredicted RBP12.41□□□□□ -0.42
VPS4B-202ENST00000588059 SMG7Q92540 1137 aaKnown RBP12.41□□□□□ -0.42
VPS4B-202ENST00000588059 SLC5A5Q92911 643 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 GJA10Q969M2 543 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 PGBD4Q96DM1 585 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 NLRP4Q96MN2 994 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 CNTNAP3BQ96NU0 1288 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 SH2D3AQ9BRG2 576 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 ESYT1Q9BSJ8 1104 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 TEKT3Q9BXF9 490 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 CNTNAP3Q9BZ76 1288 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 RSAD1Q9HA92 442 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 SLC2A4RGQ9NR83 387 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 SUCLA2Q9P2R7 463 aaPredicted RBP12.41□□□□□ -0.42
VPS4B-202ENST00000588059 FAN1Q9Y2M0 1017 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 SPTBN2O15020 2390 aa12.41□□□□□ -0.42
VPS4B-202ENST00000588059 CNTNAP2Q9UHC6 1331 aa12.4□□□□□ -0.42
VPS4B-202ENST00000588059 ANHXE9PGG2 379 aa12.4□□□□□ -0.42
VPS4B-202ENST00000588059 EFEMP2O95967 443 aa12.4□□□□□ -0.42
VPS4B-202ENST00000588059 ALDH2P05091 517 aa12.4□□□□□ -0.42
VPS4B-202ENST00000588059 GLUD2P49448 558 aa12.4□□□□□ -0.42
VPS4B-202ENST00000588059 RCAN1P53805 252 aa12.4□□□□□ -0.42
VPS4B-202ENST00000588059 RSPO4Q2I0M5 234 aaPredicted RBP12.4□□□□□ -0.42
VPS4B-202ENST00000588059 XKR3Q5GH77 459 aa12.4□□□□□ -0.42
VPS4B-202ENST00000588059 LRCH2Q5VUJ6 765 aa12.4□□□□□ -0.42
VPS4B-202ENST00000588059 ELMSAN1Q6PJG2 1045 aa12.4□□□□□ -0.42
VPS4B-202ENST00000588059 DCLRE1AQ6PJP8 1040 aa12.4□□□□□ -0.42
VPS4B-202ENST00000588059 TAS1R1Q7RTX1 841 aa12.4□□□□□ -0.42
VPS4B-202ENST00000588059 SKAP1Q86WV1 359 aa12.4□□□□□ -0.42
VPS4B-202ENST00000588059 MAML2Q8IZL2 1156 aaPredicted RBP12.4□□□□□ -0.42
VPS4B-202ENST00000588059 PJA1Q8NG27 643 aa12.4□□□□□ -0.42
VPS4B-202ENST00000588059 RDM1Q8NG50 284 aa12.4□□□□□ -0.42
VPS4B-202ENST00000588059 CCDC12Q8WUD4 166 aaPredicted RBP12.4□□□□□ -0.42
VPS4B-202ENST00000588059 CCDC136Q96JN2 1154 aa12.4□□□□□ -0.42
VPS4B-202ENST00000588059 FAM193BQ96PV7 902 aaPredicted RBP12.4□□□□□ -0.42
VPS4B-202ENST00000588059 FOXQ1Q9C009 403 aa12.4□□□□□ -0.42
VPS4B-202ENST00000588059 IFT122Q9HBG6 1241 aa12.4□□□□□ -0.42
VPS4B-202ENST00000588059 RXFP1Q9HBX9 757 aa12.4□□□□□ -0.42
VPS4B-202ENST00000588059 ANO2Q9NQ90 1003 aa12.4□□□□□ -0.42
VPS4B-202ENST00000588059 DPP7Q9UHL4 492 aa12.4□□□□□ -0.42
VPS4B-202ENST00000588059 PRG3Q9Y2Y8 225 aaPredicted RBP12.4□□□□□ -0.42
VPS4B-202ENST00000588059 LRRN2O75325 713 aa12.39□□□□□ -0.43
VPS4B-202ENST00000588059 MAFO75444 373 aaPredicted RBP12.39□□□□□ -0.43
VPS4B-202ENST00000588059 PSMD10O75832 226 aa12.39□□□□□ -0.43
VPS4B-202ENST00000588059 POMCP01189 267 aa12.39□□□□□ -0.43
VPS4B-202ENST00000588059 LAMP2P13473 410 aa12.39□□□□□ -0.43
VPS4B-202ENST00000588059 GNA11P29992 359 aa12.39□□□□□ -0.43
VPS4B-202ENST00000588059 ADD1P35611 737 aaKnown RBP12.39□□□□□ -0.43
VPS4B-202ENST00000588059 UBXN11Q5T124 520 aa12.39□□□□□ -0.43
VPS4B-202ENST00000588059 KIAA0319Q5VV43 1072 aa12.39□□□□□ -0.43
VPS4B-202ENST00000588059 B3GNT9Q6UX72 402 aa12.39□□□□□ -0.43
VPS4B-202ENST00000588059 GET4Q7L5D6 327 aaPredicted RBP12.39□□□□□ -0.43
VPS4B-202ENST00000588059 DHX32Q7L7V1 743 aaKnown RBP12.39□□□□□ -0.43
VPS4B-202ENST00000588059 MIER3Q7Z3K6 550 aa12.39□□□□□ -0.43
VPS4B-202ENST00000588059 ST13P5Q8NFI4 369 aaPredicted RBP12.39□□□□□ -0.43
VPS4B-202ENST00000588059 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.39□□□□□ -0.43
VPS4B-202ENST00000588059 KANSL3Q9P2N6 904 aa12.39□□□□□ -0.43
VPS4B-202ENST00000588059 SSX2IPQ9Y2D8 614 aa12.39□□□□□ -0.43
VPS4B-202ENST00000588059 NUMBLQ9Y6R0 609 aa12.39□□□□□ -0.43
VPS4B-202ENST00000588059 ACACBO00763 2458 aa12.39□□□□□ -0.43
VPS4B-202ENST00000588059 F8W810 466 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms