RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 ECM1Q16610 540 aa12.02□□□□□ -0.49
CLIP3-203ENST00000586457 NOMO2Q5JPE7 1267 aa12.02□□□□□ -0.49
CLIP3-203ENST00000586457 SLC27A1Q6PCB7 646 aa12.02□□□□□ -0.49
CLIP3-203ENST00000586457 COLGALT1Q8NBJ5 622 aa12.02□□□□□ -0.49
CLIP3-203ENST00000586457 POF1BQ8WVV4 589 aa12.02□□□□□ -0.49
CLIP3-203ENST00000586457 PRIMPOLQ96LW4 560 aa12.02□□□□□ -0.49
CLIP3-203ENST00000586457 APOL6Q9BWW8 343 aa12.02□□□□□ -0.49
CLIP3-203ENST00000586457 CSRNP2Q9H175 543 aa12.02□□□□□ -0.49
CLIP3-203ENST00000586457 IGFLR1Q9H665 355 aa12.02□□□□□ -0.49
CLIP3-203ENST00000586457 RSAD1Q9HA92 442 aa12.02□□□□□ -0.49
CLIP3-203ENST00000586457 SPG21Q9NZD8 308 aa12.02□□□□□ -0.49
CLIP3-203ENST00000586457 KCND2Q9NZV8 630 aa12.02□□□□□ -0.49
CLIP3-203ENST00000586457 DAXXQ9UER7 740 aaPredicted RBP12.02□□□□□ -0.49
CLIP3-203ENST00000586457 RBM19Q9Y4C8 960 aaKnown RBP12.02□□□□□ -0.49
CLIP3-203ENST00000586457 PHLPP2Q6ZVD8 1323 aa12.02□□□□□ -0.49
CLIP3-203ENST00000586457 CNTNAP2Q9UHC6 1331 aa12.02□□□□□ -0.49
CLIP3-203ENST00000586457 N4BP3O15049 544 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 ZC3H11AO75152 810 aaKnown RBP eCLIP12.01□□□□□ -0.49
CLIP3-203ENST00000586457 FGF18O76093 207 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 ALDH2P05091 517 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 PRKCBP05771 671 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 PLA2G4BP0C869 781 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 MARCKSP29966 332 aaPredicted RBP12.01□□□□□ -0.49
CLIP3-203ENST00000586457 PEX3P56589 373 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 RAD51AP2Q09MP3 1159 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 STRN3Q13033 797 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 BECN1Q14457 450 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 TJAP1Q5JTD0 557 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 CLLU1OSQ5K130 101 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 FOXD4L5Q5VV16 416 aaPredicted RBP12.01□□□□□ -0.49
CLIP3-203ENST00000586457 PDE12Q6L8Q7 609 aaKnown RBP12.01□□□□□ -0.49
CLIP3-203ENST00000586457 KCNT2Q6UVM3 1135 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 TMC7Q7Z402 723 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 IFNLR1Q8IU57 520 aaPredicted RBP12.01□□□□□ -0.49
CLIP3-203ENST00000586457 FOXD4L4Q8WXT5 416 aaPredicted RBP12.01□□□□□ -0.49
CLIP3-203ENST00000586457 TMEM169Q96HH4 297 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 ASB2Q96Q27 587 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 TCHPQ9BT92 498 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 ZHX3Q9H4I2 956 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 C17orf75Q9HAS0 396 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 POLD4Q9HCU8 107 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 KMT5AQ9NQR1 393 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 PRDM6Q9NQX0 595 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 ENTPD7Q9NQZ7 604 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 PARP2Q9UGN5 583 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 MTMR6Q9Y217 621 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 CLIC4Q9Y696 253 aa12.01□□□□□ -0.49
CLIP3-203ENST00000586457 H0YCG3 227 aa12□□□□□ -0.49
CLIP3-203ENST00000586457 HIP1RO75146 1068 aa12□□□□□ -0.49
CLIP3-203ENST00000586457 NPTXRO95502 500 aa12□□□□□ -0.49
CLIP3-203ENST00000586457 ITGB1P05556 798 aa12□□□□□ -0.49
CLIP3-203ENST00000586457 SRGAP2BP0DMP2 458 aa12□□□□□ -0.49
CLIP3-203ENST00000586457 ARF4P18085 180 aaPredicted RBP12□□□□□ -0.49
CLIP3-203ENST00000586457 NCLP19338 710 aaKnown RBP12□□□□□ -0.49
CLIP3-203ENST00000586457 HOXA11P31270 313 aaPredicted RBP12□□□□□ -0.49
CLIP3-203ENST00000586457 BCAR1P56945 870 aa12□□□□□ -0.49
CLIP3-203ENST00000586457 RESTQ13127 1097 aa12□□□□□ -0.49
CLIP3-203ENST00000586457 TCEAL5Q5H9L2 206 aa12□□□□□ -0.49
CLIP3-203ENST00000586457 RINT1Q6NUQ1 792 aa12□□□□□ -0.49
CLIP3-203ENST00000586457 MRPL10Q7Z7H8 261 aaKnown RBP12□□□□□ -0.49
CLIP3-203ENST00000586457 ZNF598Q86UK7 904 aaKnown RBP12□□□□□ -0.49
CLIP3-203ENST00000586457 SYT2Q8N9I0 419 aaPredicted RBP12□□□□□ -0.49
CLIP3-203ENST00000586457 SPPL3Q8TCT6 385 aa12□□□□□ -0.49
CLIP3-203ENST00000586457 RPS6KC1Q96S38 1066 aa12□□□□□ -0.49
CLIP3-203ENST00000586457 TLE6Q9H808 572 aa12□□□□□ -0.49
CLIP3-203ENST00000586457 TLR9Q9NR96 1032 aa12□□□□□ -0.49
CLIP3-203ENST00000586457 CLDND1Q9NY35 253 aa12□□□□□ -0.49
CLIP3-203ENST00000586457 LARSQ9P2J5 1176 aaKnown RBP12□□□□□ -0.49
CLIP3-203ENST00000586457 FAM50BQ9Y247 325 aa12□□□□□ -0.49
CLIP3-203ENST00000586457 IPPQ9Y573 584 aa12□□□□□ -0.49
CLIP3-203ENST00000586457 COL4A6Q14031 1691 aa12□□□□□ -0.49
CLIP3-203ENST00000586457 A0A1B0GUA9 196 aa11.99□□□□□ -0.49
CLIP3-203ENST00000586457 FSD2A1L4K1 749 aa11.99□□□□□ -0.49
CLIP3-203ENST00000586457 ACKR2O00590 384 aa11.99□□□□□ -0.49
CLIP3-203ENST00000586457 TBCAO75347 108 aaKnown RBP11.99□□□□□ -0.49
CLIP3-203ENST00000586457 OFD1O75665 1012 aa11.99□□□□□ -0.49
CLIP3-203ENST00000586457 POMCP01189 267 aa11.99□□□□□ -0.49
CLIP3-203ENST00000586457 KCNA5P22460 613 aa11.99□□□□□ -0.49
CLIP3-203ENST00000586457 MATR3P43243 847 aaKnown RBP eCLIP11.99□□□□□ -0.49
CLIP3-203ENST00000586457 HYIQ5T013 277 aa11.99□□□□□ -0.49
CLIP3-203ENST00000586457 RRAGBQ5VZM2 374 aa11.99□□□□□ -0.49
CLIP3-203ENST00000586457 CDCA2Q69YH5 1023 aaPredicted RBP11.99□□□□□ -0.49
CLIP3-203ENST00000586457 FAM173BQ6P4H8 233 aa11.99□□□□□ -0.49
CLIP3-203ENST00000586457 LRRC55Q6ZSA7 311 aa11.99□□□□□ -0.49
CLIP3-203ENST00000586457 RBM23Q86U06 439 aaKnown RBP11.99□□□□□ -0.49
CLIP3-203ENST00000586457 KRI1Q8N9T8 703 aaKnown RBP11.99□□□□□ -0.49
CLIP3-203ENST00000586457 MRPS27Q92552 414 aaKnown RBP11.99□□□□□ -0.49
CLIP3-203ENST00000586457 MMTAG2Q9BU76 263 aaKnown RBP11.99□□□□□ -0.49
CLIP3-203ENST00000586457 EIF2AQ9BY44 585 aaKnown RBP11.99□□□□□ -0.49
CLIP3-203ENST00000586457 FZD8Q9H461 694 aa11.99□□□□□ -0.49
CLIP3-203ENST00000586457 CWH43Q9H720 699 aa11.99□□□□□ -0.49
CLIP3-203ENST00000586457 NGRNQ9NPE2 291 aaKnown RBP11.99□□□□□ -0.49
CLIP3-203ENST00000586457 TBC1D13Q9NVG8 400 aa11.99□□□□□ -0.49
CLIP3-203ENST00000586457 TFIP11Q9UBB9 837 aaKnown RBP11.99□□□□□ -0.49
CLIP3-203ENST00000586457 STK39Q9UEW8 545 aa11.99□□□□□ -0.49
CLIP3-203ENST00000586457 CFAP45Q9UL16 551 aa11.99□□□□□ -0.49
CLIP3-203ENST00000586457 LZTS1Q9Y250 596 aa11.99□□□□□ -0.49
CLIP3-203ENST00000586457 FAN1Q9Y2M0 1017 aa11.99□□□□□ -0.49
CLIP3-203ENST00000586457 GIT1Q9Y2X7 761 aa11.99□□□□□ -0.49
CLIP3-203ENST00000586457 SRPRBQ9Y5M8 271 aaKnown RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms