RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 CCL14Q16627 93 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 FSCN1Q16658 493 aaKnown RBP6.76□□□□□ -1.33
LIG3-206ENST00000586058 ZCWPW2Q504Y3 356 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 GJC2Q5T442 439 aaPredicted RBP6.76□□□□□ -1.33
LIG3-206ENST00000586058 EFCAB12Q6NXP0 572 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 LRRC55Q6ZSA7 311 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 RSPH3Q86UC2 560 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 RHPN2Q8IUC4 686 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 C12orf56Q8IXR9 622 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 HS6ST3Q8IZP7 471 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 DAW1Q8N136 415 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 TXLNBQ8N3L3 684 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 C7orf31Q8N865 590 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 PCSK9Q8NBP7 692 aaKnown RBP6.76□□□□□ -1.33
LIG3-206ENST00000586058 CD99L2Q8TCZ2 262 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 USP6NLQ92738 828 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 TMEM143Q96AN5 459 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 NLRP4Q96MN2 994 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 ADPGKQ9BRR6 497 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 MRPL4Q9BYD3 311 aaKnown RBP6.76□□□□□ -1.33
LIG3-206ENST00000586058 INO80BQ9C086 356 aaPredicted RBP6.76□□□□□ -1.33
LIG3-206ENST00000586058 KATNBL1Q9H079 304 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 NUCKS1Q9H1E3 243 aaKnown RBP6.76□□□□□ -1.33
LIG3-206ENST00000586058 HSD3B7Q9H2F3 369 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 R3HDMLQ9H3Y0 253 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 AGPAT3Q9NRZ7 376 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 RNF186Q9NXI6 227 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 ANKFY1Q9P2R3 1169 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 SUCLA2Q9P2R7 463 aaPredicted RBP6.76□□□□□ -1.33
LIG3-206ENST00000586058 SRRDQ9UH36 339 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 DAAM1Q9Y4D1 1078 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 TRIP11Q15643 1979 aa6.76□□□□□ -1.33
LIG3-206ENST00000586058 A6NJR5 290 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 ESPNB1AK53 854 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 INO80B-WBP1J3KQ70 363 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 GPR25O00155 361 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 MAPK13O15264 365 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 AP5Z1O43299 807 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 ADCY3O60266 1144 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 F2P00734 622 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 PRKCBP05771 671 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 ZNF865P0CJ78 1059 aaPredicted RBP6.75□□□□□ -1.33
LIG3-206ENST00000586058 CYBAP13498 195 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 INSRRP14616 1297 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 RFX1P22670 979 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 VEGFBP49765 207 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 PSEN2P49810 448 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 MYL7Q01449 175 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 BFSP1Q12934 665 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 CAPSQ13938 189 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 NR1I3Q14994 352 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 SURF1Q15526 300 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 TARBP2Q15633 366 aaKnown RBP6.75□□□□□ -1.33
LIG3-206ENST00000586058 KIAA0753Q2KHM9 967 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 DNTTIP2Q5QJE6 756 aaKnown RBP6.75□□□□□ -1.33
LIG3-206ENST00000586058 GBP6Q6ZN66 633 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 RNF180Q86T96 592 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 ZNF410Q86VK4 478 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 SLC9A9Q8IVB4 645 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 LRRC8AQ8IWT6 810 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 ZC3H3Q8IXZ2 948 aaKnown RBP6.75□□□□□ -1.33
LIG3-206ENST00000586058 GPD1LQ8N335 351 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 LRRC71Q8N4P6 559 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 RNF149Q8NC42 400 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 TMEM161BQ8NDZ6 487 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 GLIS3Q8NEA6 775 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 PTCD2Q8WV60 388 aaKnown RBP6.75□□□□□ -1.33
LIG3-206ENST00000586058 NLRP7Q8WX94 980 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 TRIB2Q92519 343 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 PRIMPOLQ96LW4 560 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 NAP1L5Q96NT1 182 aaPredicted RBP6.75□□□□□ -1.33
LIG3-206ENST00000586058 FNBP1Q96RU3 617 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 PCYT2Q99447 389 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 NTPCRQ9BSD7 190 aaKnown RBP6.75□□□□□ -1.33
LIG3-206ENST00000586058 MTG1Q9BT17 334 aaPredicted RBP6.75□□□□□ -1.33
LIG3-206ENST00000586058 TCHPQ9BT92 498 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 FGFBP2Q9BYJ0 223 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 IMPG2Q9BZV3 1241 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 BCAS3Q9H6U6 928 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 TMEM134Q9H6X4 195 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 MMRN2Q9H8L6 949 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 POLD4Q9HCU8 107 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 LUC7LQ9NQ29 371 aaKnown RBP6.75□□□□□ -1.33
LIG3-206ENST00000586058 XPNPEP3Q9NQH7 507 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 XPNPEP1Q9NQW7 623 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 PRMT7Q9NVM4 692 aaPredicted RBP6.75□□□□□ -1.33
LIG3-206ENST00000586058 HSPBP1Q9NZL4 362 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 FLRT1Q9NZU1 646 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 ARHGAP28Q9P2N2 729 aa6.75□□□□□ -1.33
LIG3-206ENST00000586058 GNEQ9Y223 722 aaKnown RBP6.75□□□□□ -1.33
LIG3-206ENST00000586058 LUC7L2Q9Y383 392 aaKnown RBP6.75□□□□□ -1.33
LIG3-206ENST00000586058 R3HCC1Q9Y3T6 440 aaKnown RBP6.75□□□□□ -1.33
LIG3-206ENST00000586058 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.75□□□□□ -1.33
LIG3-206ENST00000586058 A0A1W2PQJ5 194 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 C17orf102A2RUQ5 167 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 GOLGA6L9A6NEM1 432 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 LRRC10BA6NIK2 292 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 CLDN3O15551 220 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 ARHGAP6O43182 974 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 ZSCAN12O43309 604 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms