RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	SNX29	Q8TEQ0	813 aa		14.78	□□□□□ -0.04
SREBF1-223	ENST00000584760	MSLNL	Q96KJ4	702 aa		14.78	□□□□□ -0.04
SREBF1-223	ENST00000584760	SNX27	Q96L92	541 aa		14.78	□□□□□ -0.04
SREBF1-223	ENST00000584760	NFKBIZ	Q9BYH8	718 aa		14.78	□□□□□ -0.04
SREBF1-223	ENST00000584760	RAB34	Q9BZG1	259 aa		14.78	□□□□□ -0.04
SREBF1-223	ENST00000584760	POLR3F	Q9H1D9	316 aa	Predicted RBP	14.78	□□□□□ -0.04
SREBF1-223	ENST00000584760	CWH43	Q9H720	699 aa		14.78	□□□□□ -0.04
SREBF1-223	ENST00000584760	GPRC5C	Q9NQ84	441 aa		14.78	□□□□□ -0.04
SREBF1-223	ENST00000584760	FAM105A	Q9NUU6	356 aa		14.78	□□□□□ -0.04
SREBF1-223	ENST00000584760	TDRD15	B5MCY1	1934 aa	Known RBP	14.78	□□□□□ -0.04
SREBF1-223	ENST00000584760		K7ELQ4	463 aa	Predicted RBP	14.77	□□□□□ -0.05
SREBF1-223	ENST00000584760	TSPAN1	O60635	241 aa		14.77	□□□□□ -0.05
SREBF1-223	ENST00000584760	ZNF623	O75123	536 aa		14.77	□□□□□ -0.05
SREBF1-223	ENST00000584760	RAB27A	P51159	221 aa		14.77	□□□□□ -0.05
SREBF1-223	ENST00000584760	PTPN5	P54829	565 aa		14.77	□□□□□ -0.05
SREBF1-223	ENST00000584760	MBTD1	Q05BQ5	628 aa		14.77	□□□□□ -0.05
SREBF1-223	ENST00000584760	TFDP1	Q14186	410 aa		14.77	□□□□□ -0.05
SREBF1-223	ENST00000584760	PCBP1	Q15365	356 aa	Known RBP eCLIP	14.77	□□□□□ -0.05	4e-15	■■■■□ 19.3
SREBF1-223	ENST00000584760	PADI6	Q6TGC4	694 aa		14.77	□□□□□ -0.05
SREBF1-223	ENST00000584760	DTHD1	Q6ZMT9	781 aa		14.77	□□□□□ -0.05
SREBF1-223	ENST00000584760	BRAP	Q7Z569	592 aa		14.77	□□□□□ -0.05
SREBF1-223	ENST00000584760	ADGRD2	Q7Z7M1	963 aa		14.77	□□□□□ -0.05
SREBF1-223	ENST00000584760	RBM23	Q86U06	439 aa	Known RBP	14.77	□□□□□ -0.05
SREBF1-223	ENST00000584760	SUGP1	Q8IWZ8	645 aa	Known RBP	14.77	□□□□□ -0.05
SREBF1-223	ENST00000584760	KLHL23	Q8NBE8	558 aa		14.77	□□□□□ -0.05
SREBF1-223	ENST00000584760	RNF169	Q8NCN4	708 aa		14.77	□□□□□ -0.05
SREBF1-223	ENST00000584760	PPP2R3C	Q969Q6	453 aa		14.77	□□□□□ -0.05
SREBF1-223	ENST00000584760	INTS4	Q96HW7	963 aa	Known RBP	14.77	□□□□□ -0.05
SREBF1-223	ENST00000584760	MMTAG2	Q9BU76	263 aa	Known RBP	14.77	□□□□□ -0.05
SREBF1-223	ENST00000584760	TYW1	Q9NV66	732 aa	Known RBP	14.77	□□□□□ -0.05
SREBF1-223	ENST00000584760	CLEC1B	Q9P126	229 aa		14.77	□□□□□ -0.05
SREBF1-223	ENST00000584760	STK24	Q9Y6E0	443 aa		14.77	□□□□□ -0.05
SREBF1-223	ENST00000584760	ARHGEF35	A5YM69	484 aa		14.76	□□□□□ -0.05
SREBF1-223	ENST00000584760	MEIS3P2	A8K0S8	358 aa		14.76	□□□□□ -0.05
SREBF1-223	ENST00000584760	ERLIN2	O94905	339 aa		14.76	□□□□□ -0.05
SREBF1-223	ENST00000584760	EYA4	O95677	639 aa		14.76	□□□□□ -0.05
SREBF1-223	ENST00000584760	SKI	P12755	728 aa		14.76	□□□□□ -0.05
SREBF1-223	ENST00000584760	LAG3	P18627	525 aa		14.76	□□□□□ -0.05
SREBF1-223	ENST00000584760	CYP11B2	P19099	503 aa		14.76	□□□□□ -0.05
SREBF1-223	ENST00000584760	NRIP1	P48552	1158 aa		14.76	□□□□□ -0.05
SREBF1-223	ENST00000584760	ZXDA	P98168	799 aa		14.76	□□□□□ -0.05
SREBF1-223	ENST00000584760	AMHR2	Q16671	573 aa		14.76	□□□□□ -0.05
SREBF1-223	ENST00000584760	UBXN11	Q5T124	520 aa		14.76	□□□□□ -0.05
SREBF1-223	ENST00000584760	CDCA2	Q69YH5	1023 aa	Predicted RBP	14.76	□□□□□ -0.05
SREBF1-223	ENST00000584760	MAEA	Q7L5Y9	396 aa		14.76	□□□□□ -0.05
SREBF1-223	ENST00000584760	ABI1	Q8IZP0	508 aa		14.76	□□□□□ -0.05
SREBF1-223	ENST00000584760	EFHB	Q8N7U6	833 aa		14.76	□□□□□ -0.05
SREBF1-223	ENST00000584760	COLGALT1	Q8NBJ5	622 aa		14.76	□□□□□ -0.05
SREBF1-223	ENST00000584760	SPPL3	Q8TCT6	385 aa		14.76	□□□□□ -0.05
SREBF1-223	ENST00000584760	HELQ	Q8TDG4	1101 aa		14.76	□□□□□ -0.05
SREBF1-223	ENST00000584760	DDX19A	Q9NUU7	478 aa	Known RBP	14.76	□□□□□ -0.05
SREBF1-223	ENST00000584760	KIAA1024	Q9UPX6	916 aa		14.76	□□□□□ -0.05
SREBF1-223	ENST00000584760	VPS37C	A5D8V6	355 aa	Predicted RBP	14.75	□□□□□ -0.05
SREBF1-223	ENST00000584760	LOC730098	B7Z3J9	87 aa		14.75	□□□□□ -0.05
SREBF1-223	ENST00000584760	INO80B-WBP1	J3KQ70	363 aa		14.75	□□□□□ -0.05
SREBF1-223	ENST00000584760	PDC	P20941	246 aa		14.75	□□□□□ -0.05
SREBF1-223	ENST00000584760	CDC25A	P30304	524 aa		14.75	□□□□□ -0.05
SREBF1-223	ENST00000584760	SPOUT1	Q5T280	376 aa	Known RBP	14.75	□□□□□ -0.05
SREBF1-223	ENST00000584760	KRT79	Q5XKE5	535 aa		14.75	□□□□□ -0.05
SREBF1-223	ENST00000584760	ARL6IP4	Q66PJ3	421 aa	Known RBP	14.75	□□□□□ -0.05
SREBF1-223	ENST00000584760	POF1B	Q8WVV4	589 aa		14.75	□□□□□ -0.05
SREBF1-223	ENST00000584760	RSPH1	Q8WYR4	309 aa		14.75	□□□□□ -0.05
SREBF1-223	ENST00000584760	BSND	Q8WZ55	320 aa		14.75	□□□□□ -0.05
SREBF1-223	ENST00000584760	LPP	Q93052	612 aa		14.75	□□□□□ -0.05
SREBF1-223	ENST00000584760	BHMT2	Q9H2M3	363 aa		14.75	□□□□□ -0.05
SREBF1-223	ENST00000584760	AAAS	Q9NRG9	546 aa		14.75	□□□□□ -0.05
SREBF1-223	ENST00000584760	BARX2	Q9UMQ3	279 aa	Predicted RBP	14.75	□□□□□ -0.05
SREBF1-223	ENST00000584760	PCDHB2	Q9Y5E7	798 aa		14.75	□□□□□ -0.05
SREBF1-223	ENST00000584760	PCDHB12	Q9Y5F1	795 aa		14.75	□□□□□ -0.05
SREBF1-223	ENST00000584760	VWA3A	A6NCI4	1184 aa		14.74	□□□□□ -0.05
SREBF1-223	ENST00000584760	LRRIQ4	A6NIV6	560 aa		14.74	□□□□□ -0.05
SREBF1-223	ENST00000584760	FGF18	O76093	207 aa		14.74	□□□□□ -0.05
SREBF1-223	ENST00000584760	SYT1	P21579	422 aa		14.74	□□□□□ -0.05
SREBF1-223	ENST00000584760	AXL	P30530	894 aa		14.74	□□□□□ -0.05
SREBF1-223	ENST00000584760	TCF15	Q12870	199 aa		14.74	□□□□□ -0.05
SREBF1-223	ENST00000584760	COASY	Q13057	564 aa		14.74	□□□□□ -0.05
SREBF1-223	ENST00000584760	HYI	Q5T013	277 aa		14.74	□□□□□ -0.05
SREBF1-223	ENST00000584760	NOTUM	Q6P988	496 aa		14.74	□□□□□ -0.05
SREBF1-223	ENST00000584760	MRPL10	Q7Z7H8	261 aa	Known RBP	14.74	□□□□□ -0.05
SREBF1-223	ENST00000584760	FBXL6	Q8N531	539 aa		14.74	□□□□□ -0.05
SREBF1-223	ENST00000584760	SMRP1	Q8NCR6	262 aa		14.74	□□□□□ -0.05
SREBF1-223	ENST00000584760	MICAL1	Q8TDZ2	1067 aa		14.74	□□□□□ -0.05
SREBF1-223	ENST00000584760	SNX21	Q969T3	373 aa		14.74	□□□□□ -0.05
SREBF1-223	ENST00000584760	CCDC51	Q96ER9	411 aa		14.74	□□□□□ -0.05
SREBF1-223	ENST00000584760	RPGRIP1	Q96KN7	1286 aa		14.74	□□□□□ -0.05
SREBF1-223	ENST00000584760	PRRX2	Q99811	253 aa		14.74	□□□□□ -0.05
SREBF1-223	ENST00000584760	MRPL9	Q9BYD2	267 aa	Known RBP	14.74	□□□□□ -0.05
SREBF1-223	ENST00000584760	FAM86C1	Q9NVL1	165 aa		14.74	□□□□□ -0.05
SREBF1-223	ENST00000584760	USP15	Q9Y4E8	981 aa	Predicted RBP	14.74	□□□□□ -0.05
SREBF1-223	ENST00000584760	PCDHGC5	Q9Y5F6	944 aa		14.74	□□□□□ -0.05
SREBF1-223	ENST00000584760	ZNF318	Q5VUA4	2279 aa		14.73	□□□□□ -0.05
SREBF1-223	ENST00000584760		E9PMD0	336 aa		14.73	□□□□□ -0.05
SREBF1-223	ENST00000584760	B4GALT5	O43286	388 aa		14.73	□□□□□ -0.05
SREBF1-223	ENST00000584760	ARF4	P18085	180 aa	Predicted RBP	14.73	□□□□□ -0.05
SREBF1-223	ENST00000584760	PBX3	P40426	434 aa		14.73	□□□□□ -0.05
SREBF1-223	ENST00000584760	UBE3A	Q05086	875 aa		14.73	□□□□□ -0.05
SREBF1-223	ENST00000584760	REST	Q13127	1097 aa		14.73	□□□□□ -0.05
SREBF1-223	ENST00000584760	LONRF3	Q496Y0	759 aa		14.73	□□□□□ -0.05
SREBF1-223	ENST00000584760	KCNT2	Q6UVM3	1135 aa		14.73	□□□□□ -0.05
SREBF1-223	ENST00000584760	GLB1L	Q6UWU2	654 aa		14.73	□□□□□ -0.05

Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms