RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 POMCP01189 267 aa11.14□□□□□ -0.63
RFFL-208ENST00000581039 SOD2P04179 222 aa11.14□□□□□ -0.63
RFFL-208ENST00000581039 ADCK5Q3MIX3 580 aa11.14□□□□□ -0.63
RFFL-208ENST00000581039 SPECC1Q5M775 1068 aa11.14□□□□□ -0.63
RFFL-208ENST00000581039 AGMOQ6ZNB7 445 aa11.14□□□□□ -0.63
RFFL-208ENST00000581039 MRPL10Q7Z7H8 261 aaKnown RBP11.14□□□□□ -0.63
RFFL-208ENST00000581039 RASEFQ8IZ41 740 aa11.14□□□□□ -0.63
RFFL-208ENST00000581039 RIN2Q8WYP3 895 aaPredicted RBP11.14□□□□□ -0.63
RFFL-208ENST00000581039 GJA10Q969M2 543 aa11.14□□□□□ -0.63
RFFL-208ENST00000581039 RMDN1Q96DB5 314 aa11.14□□□□□ -0.63
RFFL-208ENST00000581039 RPS6KC1Q96S38 1066 aa11.14□□□□□ -0.63
RFFL-208ENST00000581039 CEP89Q96ST8 783 aa11.14□□□□□ -0.63
RFFL-208ENST00000581039 HINFPQ9BQA5 517 aa11.14□□□□□ -0.63
RFFL-208ENST00000581039 TBC1D17Q9HA65 648 aa11.14□□□□□ -0.63
RFFL-208ENST00000581039 RSAD1Q9HA92 442 aa11.14□□□□□ -0.63
RFFL-208ENST00000581039 EPS15L1Q9UBC2 864 aa11.14□□□□□ -0.63
RFFL-208ENST00000581039 CA14Q9ULX7 337 aa11.14□□□□□ -0.63
RFFL-208ENST00000581039 SIT1Q9Y3P8 196 aa11.14□□□□□ -0.63
RFFL-208ENST00000581039 R4GN57 208 aa11.14□□□□□ -0.63
RFFL-208ENST00000581039 CACNA1AO00555 2505 aa11.13□□□□□ -0.63
RFFL-208ENST00000581039 CNTNAP2Q9UHC6 1331 aa11.13□□□□□ -0.63
RFFL-208ENST00000581039 INPPL1O15357 1258 aa11.13□□□□□ -0.63
RFFL-208ENST00000581039 TEX28O15482 410 aa11.13□□□□□ -0.63
RFFL-208ENST00000581039 EDIL3O43854 480 aa11.13□□□□□ -0.63
RFFL-208ENST00000581039 PSMD10O75832 226 aa11.13□□□□□ -0.63
RFFL-208ENST00000581039 SRGAP2CP0DJJ0 459 aa11.13□□□□□ -0.63
RFFL-208ENST00000581039 MYBP10242 640 aa11.13□□□□□ -0.63
RFFL-208ENST00000581039 SRFP11831 508 aa11.13□□□□□ -0.63
RFFL-208ENST00000581039 AFF1P51825 1210 aaKnown RBP11.13□□□□□ -0.63
RFFL-208ENST00000581039 PSMC5P62195 406 aa11.13□□□□□ -0.63
RFFL-208ENST00000581039 Q4G0T1 1027 aa11.13□□□□□ -0.63
RFFL-208ENST00000581039 ZC3H14Q6PJT7 736 aaKnown RBP11.13□□□□□ -0.63
RFFL-208ENST00000581039 Q6ZUG5 572 aa11.13□□□□□ -0.63
RFFL-208ENST00000581039 SMG7Q92540 1137 aaKnown RBP11.13□□□□□ -0.63
RFFL-208ENST00000581039 PHKBQ93100 1093 aa11.13□□□□□ -0.63
RFFL-208ENST00000581039 RHOBTB2Q9BYZ6 727 aa11.13□□□□□ -0.63
RFFL-208ENST00000581039 PIDD1Q9HB75 910 aa11.13□□□□□ -0.63
RFFL-208ENST00000581039 IFT122Q9HBG6 1241 aa11.13□□□□□ -0.63
RFFL-208ENST00000581039 UBN1Q9NPG3 1134 aa11.13□□□□□ -0.63
RFFL-208ENST00000581039 AGPAT5Q9NUQ2 364 aa11.13□□□□□ -0.63
RFFL-208ENST00000581039 PRG3Q9Y2Y8 225 aaPredicted RBP11.13□□□□□ -0.63
RFFL-208ENST00000581039 CLUHO75153 1309 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 DCHS1Q96JQ0 3298 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 ZNF292O60281 2723 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 GAS2O43903 313 aaKnown RBP11.12□□□□□ -0.63
RFFL-208ENST00000581039 NR1I2O75469 434 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 RFPL2O75678 378 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 DCNP07585 359 aaKnown RBP11.12□□□□□ -0.63
RFFL-208ENST00000581039 SPATA31D3P0C874 917 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 OR1G1P47890 313 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 GLUD2P49448 558 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 NLRP5P59047 1200 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 PUM1Q14671 1186 aaKnown RBP eCLIP11.12□□□□□ -0.63
RFFL-208ENST00000581039 KIAA0319Q5VV43 1072 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 PHLDB3Q6NSJ2 640 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 SPATA31D4Q6ZUB0 917 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 ANO5Q75V66 913 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 TAS1R1Q7RTX1 841 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 SRGAP1Q7Z6B7 1085 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 EXOC8Q8IYI6 725 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 CNNM3Q8NE01 707 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 GPR152Q8TDT2 470 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 TBCKQ8TEA7 893 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 HDAC7Q8WUI4 952 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 SLC7A3Q8WY07 619 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 BRF1Q92994 677 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 MYADMQ96S97 322 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 HERC2P3Q9BVR0 1158 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 SLC26A6Q9BXS9 759 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 C22orf23Q9BZE7 217 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 RXFP1Q9HBX9 757 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.12□□□□□ -0.63
RFFL-208ENST00000581039 VPS54Q9P1Q0 977 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 COL4A3BPQ9Y5P4 624 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 WDR87Q6ZQQ6 2873 aa11.12□□□□□ -0.63
RFFL-208ENST00000581039 CYP3A7-CYP3A51PA0A087WV96 503 aa11.11□□□□□ -0.63
RFFL-208ENST00000581039 MED19A0JLT2 244 aaPredicted RBP11.11□□□□□ -0.63
RFFL-208ENST00000581039 DKC1O60832 514 aaKnown RBP eCLIP11.11□□□□□ -0.63
RFFL-208ENST00000581039 SP9P0CG40 484 aa11.11□□□□□ -0.63
RFFL-208ENST00000581039 LAMP2P13473 410 aa11.11□□□□□ -0.63
RFFL-208ENST00000581039 ITGA4P13612 1032 aa11.11□□□□□ -0.63
RFFL-208ENST00000581039 CPA1P15085 419 aa11.11□□□□□ -0.63
RFFL-208ENST00000581039 NCLP19338 710 aaKnown RBP11.11□□□□□ -0.63
RFFL-208ENST00000581039 CYP3A7P24462 503 aa11.11□□□□□ -0.63
RFFL-208ENST00000581039 HOXA11P31270 313 aaPredicted RBP11.11□□□□□ -0.63
RFFL-208ENST00000581039 UBXN11Q5T124 520 aa11.11□□□□□ -0.63
RFFL-208ENST00000581039 PLA2G4FQ68DD2 849 aa11.11□□□□□ -0.63
RFFL-208ENST00000581039 DCLRE1AQ6PJP8 1040 aa11.11□□□□□ -0.63
RFFL-208ENST00000581039 PALB2Q86YC2 1186 aa11.11□□□□□ -0.63
RFFL-208ENST00000581039 C1orf210Q8IVY1 113 aa11.11□□□□□ -0.63
RFFL-208ENST00000581039 COLGALT2Q8IYK4 626 aa11.11□□□□□ -0.63
RFFL-208ENST00000581039 PRPF31Q8WWY3 499 aaKnown RBP11.11□□□□□ -0.63
RFFL-208ENST00000581039 PSPC1Q8WXF1 523 aaKnown RBP11.11□□□□□ -0.63
RFFL-208ENST00000581039 RUBCNQ92622 972 aa11.11□□□□□ -0.63
RFFL-208ENST00000581039 CEP170P1Q96L14 293 aa11.11□□□□□ -0.63
RFFL-208ENST00000581039 COLEC11Q9BWP8 271 aa11.11□□□□□ -0.63
RFFL-208ENST00000581039 RNF26Q9BY78 433 aaPredicted RBP11.11□□□□□ -0.63
RFFL-208ENST00000581039 NT5C3AQ9H0P0 336 aa11.11□□□□□ -0.63
RFFL-208ENST00000581039 SLKQ9H2G2 1235 aaPredicted RBP11.11□□□□□ -0.63
RFFL-208ENST00000581039 PLEKHA4Q9H4M7 779 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms