RNA–Protein interactions for RNA: ENST00000576218.5

SMG6-220, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 902 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-220ENST00000576218 PRPF4BQ13523 1007 aaKnown RBP16.85■□□□□ 0.29
SMG6-220ENST00000576218 DHX8Q14562 1220 aaKnown RBP16.85■□□□□ 0.29
SMG6-220ENST00000576218 STK38Q15208 465 aa16.85■□□□□ 0.29
SMG6-220ENST00000576218 AAK1Q2M2I8 961 aa16.85■□□□□ 0.29
SMG6-220ENST00000576218 NOMO2Q5JPE7 1267 aa16.85■□□□□ 0.29
SMG6-220ENST00000576218 ZNF598Q86UK7 904 aaKnown RBP16.85■□□□□ 0.29
SMG6-220ENST00000576218 HLA-CQ95604 372 aa16.85■□□□□ 0.29
SMG6-220ENST00000576218 PRIMPOLQ96LW4 560 aa16.85■□□□□ 0.29
SMG6-220ENST00000576218 FAM193BQ96PV7 902 aaPredicted RBP16.85■□□□□ 0.29
SMG6-220ENST00000576218 ADPGKQ9BRR6 497 aa16.85■□□□□ 0.29
SMG6-220ENST00000576218 TIPINQ9BVW5 301 aa16.85■□□□□ 0.29
SMG6-220ENST00000576218 CSRNP2Q9H175 543 aa16.85■□□□□ 0.29
SMG6-220ENST00000576218 HCSTQ9UBK5 93 aa16.85■□□□□ 0.29
SMG6-220ENST00000576218 CCDC39Q9UFE4 941 aa16.85■□□□□ 0.29
SMG6-220ENST00000576218 CNTNAP2Q9UHC6 1331 aa16.85■□□□□ 0.29
SMG6-220ENST00000576218 B4GALT5O43286 388 aa16.84■□□□□ 0.29
SMG6-220ENST00000576218 ZNF623O75123 536 aa16.84■□□□□ 0.29
SMG6-220ENST00000576218 NPTXRO95502 500 aa16.84■□□□□ 0.29
SMG6-220ENST00000576218 LINC00271P0C7V0 271 aa16.84■□□□□ 0.29
SMG6-220ENST00000576218 PLA2G4BP0C869 781 aa16.84■□□□□ 0.29
SMG6-220ENST00000576218 ARF4P18085 180 aaPredicted RBP16.84■□□□□ 0.29
SMG6-220ENST00000576218 HOXA11P31270 313 aaPredicted RBP16.84■□□□□ 0.29
SMG6-220ENST00000576218 ALDH7A1P49419 539 aaKnown RBP16.84■□□□□ 0.29
SMG6-220ENST00000576218 EFNA5P52803 228 aa16.84■□□□□ 0.29
SMG6-220ENST00000576218 PEX3P56589 373 aa16.84■□□□□ 0.29
SMG6-220ENST00000576218 MRPS5P82675 430 aaKnown RBP16.84■□□□□ 0.29
SMG6-220ENST00000576218 KRT17Q04695 432 aa16.84■□□□□ 0.29
SMG6-220ENST00000576218 HYIQ5T013 277 aa16.84■□□□□ 0.29
SMG6-220ENST00000576218 CDCA2Q69YH5 1023 aaPredicted RBP16.84■□□□□ 0.29
SMG6-220ENST00000576218 RINT1Q6NUQ1 792 aa16.84■□□□□ 0.29
SMG6-220ENST00000576218 SLC27A1Q6PCB7 646 aa16.84■□□□□ 0.29
SMG6-220ENST00000576218 KCNK18Q7Z418 384 aa16.84■□□□□ 0.29
SMG6-220ENST00000576218 POF1BQ8WVV4 589 aa16.84■□□□□ 0.29
SMG6-220ENST00000576218 BSNDQ8WZ55 320 aa16.84■□□□□ 0.29
SMG6-220ENST00000576218 PNMA5Q96PV4 448 aa16.84■□□□□ 0.29
SMG6-220ENST00000576218 KIFC3Q9BVG8 833 aa16.84■□□□□ 0.29
SMG6-220ENST00000576218 RUSC1Q9BVN2 902 aa16.84■□□□□ 0.29
SMG6-220ENST00000576218 EIF2AQ9BY44 585 aaKnown RBP16.84■□□□□ 0.29
SMG6-220ENST00000576218 UBN1Q9NPG3 1134 aa16.84■□□□□ 0.29
SMG6-220ENST00000576218 RNF19AQ9NV58 838 aa16.84■□□□□ 0.29
SMG6-220ENST00000576218 PUF60Q9UHX1 559 aaKnown RBP16.84■□□□□ 0.29
SMG6-220ENST00000576218 COG5Q9UP83 839 aa16.84■□□□□ 0.29
SMG6-220ENST00000576218 IPPQ9Y573 584 aa16.84■□□□□ 0.29
SMG6-220ENST00000576218 TRANK1O15050 2925 aa16.84■□□□□ 0.29
SMG6-220ENST00000576218 FNDC1Q4ZHG4 1894 aaPredicted RBP16.84■□□□□ 0.29
SMG6-220ENST00000576218 N4BP3O15049 544 aa16.83■□□□□ 0.28
SMG6-220ENST00000576218 FGF18O76093 207 aa16.83■□□□□ 0.28
SMG6-220ENST00000576218 PBX3P40426 434 aa16.83■□□□□ 0.28
SMG6-220ENST00000576218 KARSQ15046 597 aaKnown RBP16.83■□□□□ 0.28
SMG6-220ENST00000576218 FOXD4L6Q3SYB3 417 aaPredicted RBP16.83■□□□□ 0.28
SMG6-220ENST00000576218 TMEM119Q4V9L6 283 aa16.83■□□□□ 0.28
SMG6-220ENST00000576218 TCEAL5Q5H9L2 206 aa16.83■□□□□ 0.28
SMG6-220ENST00000576218 SPECC1Q5M775 1068 aa16.83■□□□□ 0.28
SMG6-220ENST00000576218 KCNT2Q6UVM3 1135 aa16.83■□□□□ 0.28
SMG6-220ENST00000576218 FOXD4L3Q6VB84 417 aaPredicted RBP16.83■□□□□ 0.28
SMG6-220ENST00000576218 APBB1IPQ7Z5R6 666 aaPredicted RBP16.83■□□□□ 0.28
SMG6-220ENST00000576218 CDR2LQ86X02 465 aaPredicted RBP16.83■□□□□ 0.28
SMG6-220ENST00000576218 ATXN2LQ8WWM7 1075 aaKnown RBP16.83■□□□□ 0.28
SMG6-220ENST00000576218 CWH43Q9H720 699 aa16.83■□□□□ 0.28
SMG6-220ENST00000576218 KMT5AQ9NQR1 393 aa16.83■□□□□ 0.28
SMG6-220ENST00000576218 PARP2Q9UGN5 583 aa16.83■□□□□ 0.28
SMG6-220ENST00000576218 KIAA1671Q9BY89 1806 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 PHLPP2Q6ZVD8 1323 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 CARNS1A5YM72 827 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 MEIS3P2A8K0S8 358 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 K7ERI5 159 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 PLCG1P19174 1290 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 NCLP19338 710 aaKnown RBP16.82■□□□□ 0.28
SMG6-220ENST00000576218 SMTNP53814 917 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 UBE3AQ05086 875 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 GRIN1Q05586 938 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 AMHR2Q16671 573 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 UBXN11Q5T124 520 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 PPP4R3CPQ6ZMV5 832 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 LRRC55Q6ZSA7 311 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 GPBP1Q86WP2 473 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 SYT2Q8N9I0 419 aaPredicted RBP16.82■□□□□ 0.28
SMG6-220ENST00000576218 KRI1Q8N9T8 703 aaKnown RBP16.82■□□□□ 0.28
SMG6-220ENST00000576218 SPPL3Q8TCT6 385 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 TMEM169Q96HH4 297 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 USP28Q96RU2 1077 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 RPS6KC1Q96S38 1066 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 IGFLR1Q9H665 355 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 ENTPD7Q9NQZ7 604 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 TLR9Q9NR96 1032 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 SPG21Q9NZD8 308 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 KCND2Q9NZV8 630 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 KANSL3Q9P2N6 904 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 HES2Q9Y543 173 aa16.82■□□□□ 0.28
SMG6-220ENST00000576218 TBCAO75347 108 aaKnown RBP16.81■□□□□ 0.28
SMG6-220ENST00000576218 OFD1O75665 1012 aa16.81■□□□□ 0.28
SMG6-220ENST00000576218 ZSCAN22P10073 491 aaPredicted RBP16.81■□□□□ 0.28
SMG6-220ENST00000576218 GUCY2CP25092 1073 aa16.81■□□□□ 0.28
SMG6-220ENST00000576218 MLH1P40692 756 aa16.81■□□□□ 0.28
SMG6-220ENST00000576218 STRN3Q13033 797 aa16.81■□□□□ 0.28
SMG6-220ENST00000576218 BECN1Q14457 450 aa16.81■□□□□ 0.28
SMG6-220ENST00000576218 BMS1Q14692 1282 aaKnown RBP16.81■□□□□ 0.28
SMG6-220ENST00000576218 PTPAQ15257 358 aa16.81■□□□□ 0.28
SMG6-220ENST00000576218 TJAP1Q5JTD0 557 aa16.81■□□□□ 0.28
SMG6-220ENST00000576218 AGMOQ6ZNB7 445 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms